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Vaginal Microbiota Molecular Profiling in Women with Bacterial Vaginosis Original paper

Researched by:

  • Divine Aleru ID
    Divine Aleru

    User avatarI am a biochemist with a deep curiosity for the human microbiome and how it shapes human health, and I enjoy making microbiome science more accessible through research and writing. With 2 years experience in microbiome research, I have curated microbiome studies, analyzed microbial signatures, and now focus on interventions as a Microbiome Signatures and Interventions Research Coordinator.

April 3, 2025

  • Bacterial Vaginosis
    Bacterial Vaginosis

    Bacterial vaginosis (BV) is caused by an imbalance in the vaginal microbiota, where the typically dominant Lactobacillus species are significantly reduced, leading to an overgrowth of anaerobic and facultative bacteria.

Researched by:

  • Divine Aleru ID
    Divine Aleru

    User avatarI am a biochemist with a deep curiosity for the human microbiome and how it shapes human health, and I enjoy making microbiome science more accessible through research and writing. With 2 years experience in microbiome research, I have curated microbiome studies, analyzed microbial signatures, and now focus on interventions as a Microbiome Signatures and Interventions Research Coordinator.

Last Updated: 2025

Microbiome Signatures identifies and validates condition-specific microbiome shifts and interventions to accelerate clinical translation. Our multidisciplinary team supports clinicians, researchers, and innovators in turning microbiome science into actionable medicine.

Divine Aleru

I am a biochemist with a deep curiosity for the human microbiome and how it shapes human health, and I enjoy making microbiome science more accessible through research and writing. With 2 years experience in microbiome research, I have curated microbiome studies, analyzed microbial signatures, and now focus on interventions as a Microbiome Signatures and Interventions Research Coordinator.

What Was Studied?

This study evaluated the microbial composition of the vaginal microbiota in women with bacterial vaginosis (BV) using molecular profiling techniques. Researchers aimed to determine the dominant bacterial species in BV, assess the role of Lactobacillus species, and evaluate the diagnostic potential of a multiplex real-time PCR test. This approach was considered as an alternative to traditional diagnostic methods like Amsel’s criteria and Nugent scoring, which often lack consistency.

Who Was Studied?

The study included 331 non-pregnant women who reported vaginal discharge. BV was confirmed through clinical examination and Nugent scoring. To gain a more detailed understanding of microbial composition, researchers analyzed vaginal microbiota using a real-time PCR test called Femoflor. This test detects key BV-associated bacteria, sexually transmitted disease (STD) pathogens, and some viruses, providing a broader perspective on vaginal health.

Most Important Findings

The study found that BV-positive women had significantly lower Lactobacillus levels compared to healthy controls. More specifically, Lactobacillus crispatus was severely depleted, while Lactobacillus iners remained dominant in many BV cases. This distinction is important, as L. crispatus is associated with a healthy vaginal microbiome, whereas L. iners is often found in transitional microbiota states and may contribute to recurrence.

Additionally, the study identified a significant presence of anaerobic bacteria in BV cases. Gardnerella vaginalis was the most prevalent, followed closely by Atopobium vaginae (recently renamed Fannyhessea vaginae), Prevotella bivia, Mobiluncus spp., Peptostreptococcus anaerobius, and Megasphaera spp.. These bacteria play a crucial role in biofilm formation, which not only protects BV-associated pathogens from antibiotic treatment but also increases the likelihood of recurrence.

The study emphasized the high diagnostic accuracy of the Femoflor real-time PCR test. Unlike traditional methods, this molecular test demonstrated high sensitivity and specificity in detecting BV-associated microbiota, even in cases where the vaginal microbiota appeared intermediate. The test was also able to detect STD pathogens such as Mycoplasma genitalium, Chlamydia trachomatis, and Neisseria gonorrhoeae, which were present only in BV-positive women. This finding suggests a potential link between BV and increased susceptibility to sexually transmitted infections.

Implications of the Study

These findings reinforce the need for molecular diagnostics in BV management. Traditional methods like Amsel’s criteria and Nugent scoring rely on subjective interpretation and often fail to identify BV in women with intermediate microbiota. The study suggests that real-time PCR testing offers a more reliable alternative, improving diagnostic accuracy and guiding more targeted treatment approaches.

The depletion of L. crispatus and dominance of L. iners in BV cases also raises concerns about the effectiveness of current treatment strategies. L. iners is often present in transitional microbiota states and does not provide the same protective benefits as L. crispatus. Future therapies should focus on restoring L. crispatus-dominated microbiota while addressing biofilm-associated bacterial communities to prevent recurrence. The study supports integrating molecular diagnostics into routine gynecological care and highlights the need for microbiome-targeted interventions to improve BV outcomes.

Bacterial Vaginosis

Bacterial vaginosis (BV) is caused by an imbalance in the vaginal microbiota, where the typically dominant Lactobacillus species are significantly reduced, leading to an overgrowth of anaerobic and facultative bacteria.

Amsel Criteria

Amsel's Criteria is a clinically established diagnostic method for bacterial vaginosis, offering a practical and accessible alternative to laboratory-based approaches. It evaluates four key clinical indicators, ensuring timely diagnosis and intervention in outpatient settings.

Nugent Score

The Nugent Score is a standardized Gram stain-based scoring system used to diagnose bacterial vaginosis (BV) by assessing key bacterial morphotypes in vaginal samples. With its high specificity, it remains a gold standard in microbiome research, though its complexity and need for trained personnel make it less common in routine clinical practice.

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