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Karen Pendergrass, Standards Team

About

Karen Pendergrass is a microbiome researcher specializing in microbiome-targeted interventions (MBTIs). She systematically analyzes scientific literature to identify microbial patterns, develop hypotheses, and validate interventions. As the founder of the Microbiome Signatures Database, she bridges microbiome research with clinical practice. In 2012, based on her own investigative research, she became the first documented case of FMT for Celiac Disease—four years before the first published case study.

Recent Posts

2025-08-22 15:44:56

Siderophores

Siderophores are microbial iron-chelating molecules that enable pathogens to overcome host iron restriction, shape microbiome ecology, and serve as therapeutic targets.

2025-08-22 09:49:23

Role of Iron in Bacterial Pathogenesis: Clinical Takeaways from an Editorial

What was reviewed?This editorial synthesizes evidence on the role of iron in bacterial pathogenesis, emphasizing how iron scarcity and host nutritional immunity shape virulence, metabolic strategy, and antibiotic tolerance across diverse pathogens. Mechanisms covered include siderophore production and piracy, heme acquisition, ferrous iron uptake via Feo, and regulatory circuitry such as Fur and the newly […]

2025-08-22 07:39:31

Plasma Iron Infection Risk: Role of TSAT and HFE C282Y in Immune Defense

This review summarizes evidence that both low and high plasma iron increase infection risk, particularly in individuals with FE Y homozygosity. Maintaining stable transferrin saturation is vital for immune function, with implications for managing hemochromatosis and iron deficiency to prevent infections and support microbiome health.

2025-08-22 07:34:10

Iron (Fe)

Iron is a pivotal nutrient at the host–pathogen interface. Virtually all microbes (with rare exceptions like Borrelia) require iron for processes from NA synthesis to respiration. [1] In human hosts, free iron is vanishingly scarce due to “nutritional immunity,” wherein iron is locked up in hemoproteins or tightly bound by transport proteins.[2] This metal tug-of-war […]

2025-08-01 07:40:31

Inductively Coupled Plasma Mass Spectrometry (ICP-MS)

Inductively Coupled Plasma Mass Spectrometry (CP-S) is an analytical technique used to determine the elemental composition of a sample by ionizing the sample with an inductively coupled plasma and then measuring the mass-to-charge ratio of the ions. CP-S is a highly sensitive method, capable of detecting elements at trace and ultra-trace levels, making it valuable in […]

2025-07-28 18:54:29

Ciclopirox Antifungal and Anti-Inflammatory Review: Dermatology to Oncology

Ciclopirox and its salt form exhibit broad-spectrum antifungal, antibacterial, and anti-inflammatory activity via iron chelation and enzyme inhibition. With low resistance potential, they outperform many azoles and show promise in oncology, virology, and neuroinflammation, making them valuable tools in dermatology and beyond.

2025-07-28 12:01:20

Zinc-Induced Siderophore Production in Penicillium and Rhizosphere Fungi

Zinc ions enhanced siderophore production in fungi from Panax ginseng rhizosphere, with optimal levels at 150 µg/ml. Penicillium commune JHO produced ferrichrome-type siderophores, suggesting zinc may drive microbial adaptations in metal-rich environments with implications for plant health and bioremediation.

2025-07-27 06:50:54

Bee Venom as a Novel Antifungal Agent Against Microsporum canis

Bee venom showed partial antifungal activity against resistant M. canis isolates, supporting its evaluation as a potential topical therapeutic. While not as potent as terbinafine, V outperformed fluconazole and amphotericin B in susceptible isolates, highlighting its promise amid rising antifungal resistance.

2025-07-27 06:48:48

Microsporum canis (M. canis)

Microsporum canis (M. canis) is a zoophilic dermatophyte common in cats and dogs, responsible for 90% of feline dermatophytoses worldwide.[1][2] It has significant zoonotic potential, transmitting to humans through fomites or direct animal contact, causing severe superficial mycosis. M. canis is considered anthropo-zoophilic and can infect pediatric or immunocompromised patients, causing severe inflammatory responses such […]

2025-07-22 15:56:10

How Toxic and Essential Metals Disrupt Gut Microbiota: A Comprehensive Review

This review maps the bidirectional interactions between toxic and essential metals and the gut microbiota, detailing microbial shifts and host impacts. It highlights specific microbial taxa disrupted by metals like arsenic, cadmium, and nickel, providing insight into metal-driven dysbiosis and its implications for disease pathogenesis.

2025-06-15 13:59:35

Lugdunin

Lugdunin is a microbiome-derived cyclic peptide antibiotic with direct anti-S. aureus activity and host immune-boosting effects. It induces L-37 and XCL8, recruits immune cells, and synergizes with host peptides, making it a promising candidate for RSA and atopic dermatitis interventions.

2025-06-13 10:47:36

Pathobiont

Pathobionts are native microbes with the capacity to cause disease under disrupted host or microbiome conditions.

2025-06-13 06:48:42

Staphylococcus aureus: A Review of the Pathogenesis and Virulence Mechanisms

This review synthesizes key mechanisms of Staphylococcus aureus virulence, including colonization strategies, immune evasion, metabolic adaptability, and antimicrobial resistance. It highlights major microbial associations, such as siderophore-mediated modulation of the nasal microbiome and VL-driven pathogenesis, offering translational insights for microbiome-targeted diagnostics, decolonization, and anti-virulence therapies.

2025-06-12 09:26:25

Orange juice neutralizes the proinflammatory effect of a high-fat, high-carbohydrate meal and prevents endotoxin increase and Toll-like receptor expression 1–3

In healthy adults, co-ingesting orange juice with a high-fat, high-carbohydrate meal dramatically blunted postprandial inflammatory responses. Orange juice prevented meal-induced rises in plasma endotoxin (PS) and monocyte Toll-like receptor expression, highlighting a novel dietary strategy to counteract metabolic endotoxemia and oxidative stress, with implications for mitigating insulin resistance and atherosclerosis.

2025-06-09 08:54:56

High Prevalence of Nickel Allergy in an Overweight Female Population: A Microbial Metallomics Commentary

What was studied?This pilot observational study assessed two interconnected phenomena: (1) the prevalence of nickel allergy in an overweight Italian population and (2) the impact of a normocaloric, Nickel Diet (NiD) on MI and waist circumference in nickel-sensitive individuals. The authors sought to evaluate whether nickel hypersensitivity is more common in overweight individuals and whether […]

2025-06-08 14:11:03

Urease

Urease is a nickel-dependent microbial enzyme that breaks down urea into ammonia, altering local pH and nitrogen availability. While essential for microbial survival in acidic niches and nutrient-limited environments, urease activity also contributes to conditions like ulcers, urinary stones, colitis, and hepatic encephalopathy.

2025-05-24 07:22:46

STOP Advisory: Reevaluating Zinc Supplementation in Endometriosis

Excessive zinc intake may worsen endometriosis by activating estrogen receptors, disrupting immune function, and altering the microbiome. A large HANES study found that intake above 14 mg/day significantly increases endometriosis risk. With many supplements exceeding this threshold, routine zinc supplementation may contribute to disease progression rather than prevention, prompting a Suggested Termination of Practice (TOP).

2025-05-17 13:36:52

Mercury and nickel allergy/ Risk factors in fatigue and autoimmunity

Hypersensitivity to mercury and nickel was significantly more common in fatigued and autoimmune patients than in healthy controls. Removal of dental metals reversed symptoms and immune activation, suggesting that metal-driven immune dysregulation may underlie fatigue and autoimmunity.

2025-05-17 12:19:06

Irritable Bowel Syndrome and Nickel Allergy:What Is the Role of the Low Nickel Diet?

What was studied?This pilot study evaluated the prevalence of nickel (Ni) allergy in individuals diagnosed with irritable bowel syndrome (BS) and investigated the clinical efficacy of a low-nickel diet (NiD) in this population. Specifically, the authors assessed the impact of the dietary intervention on gastrointestinal symptoms, intestinal permeability, quality of life, and psychological status in […]

2025-05-15 09:21:55

Research Fast-Track Justification: Tinidazole for Endometriosis

Tinidazole shows strong alignment with endometriosis microbiome signatures by targeting MAs such as Prevotella and Fusobacterium. Its pharmacological profile and potential for microbial realignment make it a compelling candidate for fast-tracked translational research and microbiome-targeted intervention.

2025-05-15 08:52:26

Research Fast-Track (RFT) Designation

The Research Track (FT) designation is a priority label used within the Microbiome Signatures framework to identify microbiome-targeted interventions that demonstrate exceptional translational potential and clinical relevance. This designation highlights interventions that warrant accelerated research, validation, and collaborative exploration due to their alignment with condition-specific microbiome signatures and their capacity to impact disease pathogenesis or […]

2025-05-13 13:49:00

Plants that Hyperaccumulate Heavy Metals

This chapter reviews hyperaccumulator plants, especially in the Brassicaceae family, and their mechanisms of metal uptake. It highlights implications for human health, including how high-metal diets may shift the microbiome toward dysbiosis—an insight relevant to conditions like endometriosis where metallomic imbalances and microbial disruptions intersect.

2025-05-03 17:24:08

Metals at the Host–Fungal Pathogen Battleground

Fungal pathogens rely on metal acquisition for virulence. This review reveals how host tissues manipulate iron, copper, zinc, and manganese to starve or intoxicate fungi and how pathogens adapt, with implications for antifungal therapy and microbiome-targeted interventions.

2025-05-03 17:08:35

Role of Nickel in Microbial Pathogenesis

Nickel-dependent enzymes like urease and hydrogenase are essential for pathogen virulence. This review outlines the mechanisms by which pathogens acquire and utilize nickel and explores implications for therapy and microbiome balance.

2025-04-28 17:30:49

Metformin

Metformin is a synthetic derivative of guanidine derived from the guanidine alkaloid of the plant Galega officinalis L. with significant hypoglycemic effects. It is a first-line antihyperglycemic agent due to its efficacy, low cost, and favorable safety profile.

2025-04-02 09:24:38

Metallomics in Neurodegenerative Diseases: A mini-review

This review highlights how neurodegenerative diseases like Alzheimer’s disease (D), Parkinson’s disease (D), and dementia with Lewy bodies (LB) exhibit disease-specific metallomic signatures, with copper depletion as a shared feature. Metal imbalances reflect both cause and consequence in neurodegeneration and may offer diagnostic potential when captured through region-specific elemental analysis.

2025-04-01 14:10:00

Metallomic signatures of brain tissues distinguishes between cases of dementia with Lewy bodies, Alzheimer’s disease, and Parkinson’s disease dementia

Dementia with Lewy bodies (LB) brains show widespread copper depletion and region-specific sodium, manganese, iron, and selenium alterations. While copper loss is common to D and DD, LB presents a distinct metallomic fingerprint, enabling disease differentiation via CA. Metallomic profiling may aid in diagnosing overlapping dementias and reveals unique pathophysiological signatures.

2025-03-27 13:55:37

Urine metallomics signature as an indicator of pancreatic cancer†

This study identifies a distinct urinary metallomic signature in pancreatic cancer patients, marked by altered calcium, magnesium, copper, and zinc levels, along with lighter zinc isotopic composition. These findings suggest that non-invasive urine tests could enable early DAC detection by leveraging trace metal imbalances and stable isotope shifts.

2025-03-27 13:13:56

Metallomic Signatures

A metallomic signature is the condition-specific profile of trace metals and metal-binding molecules that reflects disrupted metal homeostasis.

2025-03-22 08:58:17

Facultative Anaerobes

Facultative anaerobes are microorganisms—primarily bacteria—that possess the metabolic flexibility to grow in both the presence and absence of oxygen.

2025-03-03 11:37:56

Nickel in Escherichia coli: Metabolic and Pathogenic Roles

Nickel plays a crucial role in Escherichia coli, serving as a cofactor for hydrogenases, urease, and detoxification enzymes. These functions support metabolism, acid resistance, and virulence in pathogenic strains like TEC. E. coli also employs specialized nickel acquisition systems to counteract host-imposed metal sequestration, ensuring enzymatic activity in hostile environments.

2025-03-03 06:56:57

Metalloprotease

A metalloprotease, also termed a metalloproteinase, is an enzyme that catalyzes the hydrolysis of peptide bonds in proteins, relying on metal ions—most commonly zinc (Zn²⁺), but also calcium (Ca²⁺), manganese (Mn²⁺), or cobalt (Co²⁺)—as essential cofactors for its catalytic activity. Classified within the broader group of proteases (peptidases), metalloproteases are distinct due to their metal-ion […]

2025-02-28 14:12:54

Nutritional Immunity

Nutritional immunity restricts metal access to pathogens, leveraging sequestration, transport, and toxicity to control infections and immunity.

2025-02-28 11:21:26

Lactoferrin: a secret weapon in the war against pathogenic bacteria

This review definitively showcases lactoferrin’s antimicrobial prowess against resistant bacteria, detailing its mechanisms, effects on virulence factors like biofilms, and potential to restore microbial balance, marking it as a vital therapeutic ally for clinicians.