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1H NMR- based metabolomics approaches as non-invasive tools for diagnosis of endometriosis A Comparative Study of Blood Levels of Manganese, Some Macroelements and Heavy Metals in Obese and Non-Obese Polycystic Ovary Syndrome Patients A Comparative Study of the Gut Microbiota Associated With Immunoglobulin a Nephropathy and Membranous Nephropathy A comparative study of the gut microbiota in immune-mediated inflammatory diseases-does a common dysbiosis exist? A comprehensive analysis of breast cancer microbiota and host gene expression A comprehensive analysis of breast cancer microbiota and host gene expression A cross-sectional analysis about bacterial vaginosis, high-risk human papillomavirus infection, and cervical intraepithelial neoplasia in Chinese women A cross-sectional pilot study of birth mode and vaginal microbiota in reproductive-age women A metabonomics approach as a means for identification of potentialbiomarkers for early diagnosis of endometriosis A More Diverse Cervical Microbiome Associates with Better Clinical Outcomes in Patients with Endometriosis: A Pilot Study A Multi-Omic Systems-Based Approach Reveals Metabolic Markers of Bacterial Vaginosis and Insight into the Disease A New Approach to Polycystic Ovary Syndrome: The Gut Microbiota A Review of the Anti-inflammatory Properties of Clindamycin in the Treatment of Acne Vulgaris A Systematic Review and Meta-Analysis of Premenstrual Syndrome with Special Emphasis on Herbal Medicine and Nutritional Supplements. Adherence to the Mediterranean Diet, Dietary Patterns and Body Composition in Women with Polycystic Ovary Syndrome (PCOS)
Genetic and Epigenetic Theory of Disease

Did you know?
Epigenetic changes are reversible, unlike permanent genetic mutations. This allows for the modification of gene expression through lifestyle changes, drugs, or environmental factors, potentially reversing adverse health effects.

Genetic and Epigenetic Theory of Disease

April 16, 2024

The Genetic and Epigenetic Theory of Disease posits that genetic mutations and epigenetic modifications, influenced by environment and lifestyle, impact gene function and disease development, providing insights into disease mechanisms and potential personalized treatments.

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Last Updated: April 16, 2024

Microbiome Signatures identifies and validates condition-specific microbiome shifts and interventions to accelerate clinical translation. Our multidisciplinary team supports clinicians, researchers, and innovators in turning microbiome science into actionable medicine.

Karen Pendergrass

Karen Pendergrass is a microbiome researcher specializing in microbiome-targeted interventions (MBTIs). She systematically analyzes scientific literature to identify microbial patterns, develop hypotheses, and validate interventions. As the founder of the Microbiome Signatures Database, she bridges microbiome research with clinical practice. In 2012, based on her own investigative research, she became the first documented case of FMT for Celiac Disease—four years before the first published case study.

Overview

The Genetic and Epigenetic Theory of Disease explores how inherited genetic variations and changes in gene expression without altering the DNA sequence contribute to the development of diseases. This theory integrates two fundamental concepts: genetics, which studies the DNA sequence inherited from one’s parents, and epigenetics, which involves modifications on or around DNA that affect gene activity. Understanding these can provide deep insights into the mechanisms underlying various health conditions, like endometriosis, and pave the way for personalized medicine approaches.

Genetic Theory

Genetics focuses on the DNA sequence itself. Genetics focuses on the DNA sequence. Each individual inherits two copies of each gene, one from each parent. Variations in these genes can influence disease susceptibility and medication response.

Genetic ConceptsDetails
Types of Genetic VariationsSingle nucleotide polymorphisms (SNPs) are minor changes in DNA building blocks, while gene mutations are larger alterations that can significantly impact gene function. Both types of genetic variations play crucial roles in health and disease.
Diseases Linked to Genetic FactorsMonogenic diseases result from mutations in a single gene, like cystic fibrosis. Polygenic diseases involve variations in multiple genes and are common in conditions such as diabetes, heart disease, and many cancers. Both types underscore the genetic basis of disease.

Epigenetic Theory

Epigenetics involves changes that influence gene activity without altering the DNA sequence. These changes can turn genes on or off and are influenced by lifestyle, environmental exposures, and stress.

Epigenetic ConceptsDetails
Common Epigenetic MechanismsDNA methylation suppresses gene transcription, histone modification controls DNA structure and expression, and non-coding RNA regulates gene activity without coding for proteins. These are key epigenetic mechanisms that influence genetic function.
Dynamics and Heritability of Epigenetic ChangesEpigenetic changes are dynamic and can be altered by environmental conditions. They can be inherited across generations without changing the DNA sequence, affecting disease susceptibility.

Microbiome Impact on Epigenetics

The microbiome, particularly the gut microbiota, influences epigenetics through several mechanisms, affecting the expression of genes in host cells in ways that can have profound impacts on health and disease. The interplay between the microbiome and epigenetics is a compelling example of how environmental factors (in this case, the communities of microorganisms that inhabit the human body) can influence genetic expression dynamically and reversibly, impacting health and disease states. This understanding opens potential therapeutic avenues, such as modifying the microbiome through diet, probiotics, or prebiotics to effect favorable epigenetic changes. Here’s an overview of how the microbiome can influence epigenetic modifications:

Microbiome Influence on EpigeneticsDetails
Production of MetabolitesGut bacteria produce metabolites like SCFAs (butyrate, propionate, acetate) that act as signaling molecules. Butyrate, for example, inhibits histone deacetylases, affecting histone modification and gene expression.
Modification of HistonesMicrobial metabolites, such as SCFAs, can modify histones, leading to altered chromatin structure and gene expression. Butyrate increases histone acetylation, enhancing transcription of genes involved in immune function, inflammation control, and cancer suppression.
DNA MethylationMicrobial metabolites can influence DNA methylation patterns, which can activate or silence genes. Changes in DNA methylation are linked to diseases like cancer, autoimmune disorders, and neurological conditions.
Regulation by Non-Coding RNAsThe microbiota impacts the production of host non-coding RNAs, including microRNAs, which regulate gene expression post-transcriptionally. These miRNAs can degrade specific mRNAs or inhibit their translation, influenced by microbial signals.
Immune System ModulationThe microbiome is crucial in immune system development and function, affecting epigenetic regulation within immune cells. This modulation influences the body’s response to pathogens and the development of inflammatory and autoimmune diseases.

Clinical Implications

Disease Prediction and Prevention: By understanding genetic predispositions and epigenetic markers contributing to diseases, healthcare can be more proactive, targeting at-risk individuals early on with specific preventive measures.

Personalized Medicine: Genetic and epigenetic profiling can tailor medical treatments to individuals, enhancing efficacy and minimizing side effects. For example, cancer treatments can be personalized based on tumor cells’ genetic and epigenetic profiles.

Reversibility of Epigenetic Changes: Unlike genetic mutations, epigenetic changes are often reversible. This offers potential therapeutic targets for reversing adverse epigenetic changes, such as those induced by environmental factors such as pollution, diet, or poor lifestyle choices.

Conclusion

The Genetic and Epigenetic Theory provides a comprehensive framework for understanding the biological basis of disease. It underscores the complexity of human health, illustrating how our environment interacts with our genetic makeup. For clinicians and patients alike, a grasp of these concepts encourages a more nuanced approach to health care, emphasizing both genetic heritage and the powerful impact of our environment and behaviors on our genes.

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Somatic stem cells and their dysfunction in endometriosis
January 6, 2015
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This study explored the involvement of somatic and endometrial stem cells in the pathogenesis of endometriosis through a literature review. Key findings include the stem cell clonality in lesions, dysregulated behaviors contributing to disease progression, and genetic alterations. These insights could lead to improved diagnostic tests and targeted therapies, enhancing disease management and treatment strategies.

What was studied?

The study focused on the role of somatic stem cells (SSCs), including endometrial stem cells (EnSCs) and bone marrow-derived mesenchymal stem cells (MSCs), in the pathogenesis of endometriosis. This was conducted through a comprehensive literature review, including in vitro experiments and studies on animal models and human tissue analyses. The research examined the contributions of these stem cells to the development and growth of endometriosis, exploring their genetic, phenotypic, and functional characteristics as well as their involvement in the disease’s mechanisms.

 

Who was studied?

The study subjects included stem cells derived from human and animal endometrium and stem cells involved in endometriosis pathology sourced from menstrual blood and bone marrow. This research compiled evidence from various sources, including previously conducted experiments and clinical observations focusing on how these stem cells contribute to the formation and progression of endometriosis lesions in women affected by the disease and in relevant animal models.

 

What were the most important findings?

Clonality and Origin of Lesions: Evidence suggests that ovarian endometriotic cysts and peritoneal endometriotic lesions may arise from a clonal origin, indicating a possible stem cell basis for the disease.

Stem Cell Dysregulation: Stem cells, particularly EnSCs and MSCs, exhibit dysregulated behaviors in endometriosis, such as increased proliferation, invasiveness, and altered expression of markers that suggest a stem cell-like undifferentiated state.

Contribution to Lesion Growth: Bone marrow-derived stem cells, including MSCs and endothelial progenitor cells, were found to contribute to the pathogenesis and growth of endometriotic lesions by promoting angiogenesis and possibly by transdifferentiating into endometrial-like cells.

Molecular and Phenotypic Alterations: Stem/progenitor cells in endometriotic lesions display a range of genetic and epigenetic alterations and an increased expression of pro-angiogenic factors, which are crucial for lesion survival and growth.

 

What are the greatest implications of this study?

Diagnostic Advancements: The findings suggest that markers identified in the stem cells associated with endometriosis could potentially be used to develop non-invasive diagnostic tests with higher sensitivity and specificity, aiding in early disease detection.

Therapeutic Interventions: Targeting dysfunctional stem cells or their altered pathways offers a promising strategy for developing more effective treatments. This could include interventions that inhibit the recruitment and proliferation of these cells at ectopic sites or modify their angiogenic and inflammatory behaviors.

Understanding Disease Mechanisms: By integrating stem cell-based insights into the pathogenesis of endometriosis, this study supports a more comprehensive understanding of the disease’s etiology, which can lead to more targeted and effective clinical management strategies.

The emphasis on stem cell contributions to endometriosis not only opens up new avenues for research but also highlights potential therapeutic targets that could significantly improve the management and treatment of endometriosis, potentially improving the quality of life for affected women.

Epigenetics of endometriosis
April 16, 2024
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This paper reviewed the role of epigenetics in endometriosis, exploring DNA methylation and histone modifications as key factors. It highlighted potential diagnostic, prognostic, and therapeutic applications, including non-surgical treatments like histone deacetylase inhibitors, suggesting a promising shift towards targeted molecular approaches in managing the disease.

What was studied?

The review focused on the role of epigenetic changes in endometriosis, exploring how these modifications influence the disease’s etiopathogenesis, diagnosis, and therapeutic approaches. It reviewed existing evidence up to June 2009, linking epigenetic aberrations such as DNA methylation and histone modification to endometriosis, and discussed the potential of these aberrations in developing non-surgical medical therapies for the condition.

 

Who was studied?

The review examined accumulated research data from various studies on endometriosis. This included an analysis of epigenetic changes in the DNA and histone modifications of cells from women affected by endometriosis. It highlighted findings from in vitro studies and also drew insights from broader genetic studies related to hormone functions and immune responses that contribute to endometriosis.

 

What were the most important findings?

Epigenetic Basis of Endometriosis: There is substantial evidence suggesting that epigenetic mechanisms play a significant role in the development and progression of endometriosis, particularly through DNA methylation and histone modifications.

Diagnostic and Prognostic Potential: DNA methylation markers and microRNA (miRNA) profiles offer promising avenues for early diagnosis and prognosis of endometriosis, potentially allowing for better management of the disease.

Therapeutic Innovations: Histone deacetylase inhibitors (HDACIs) have shown promise in in vitro studies as potential treatments for endometriosis by reversing epigenetic aberrations.

 

What are the greatest implications of this review?

The review posits that understanding and manipulating epigenetic changes could lead to significant advances in treating endometriosis. Specifically, epigenetic therapies could provide new, non-surgical options for managing the disease, potentially reducing the need for repetitive surgeries and improving the quality of life for patients. Additionally, epigenetic markers may revolutionize the diagnosis and monitoring of endometriosis, making it possible to detect the disease earlier and tailor treatments more effectively. Overall, the study suggests a shift towards more targeted molecular therapies and diagnostics in endometriosis care, highlighting the need for further research into epigenetic mechanisms.

Endometriosis

Endometriosis involves ectopic endometrial tissue causing pain and infertility. Validated and Promising Interventions include Hyperbaric Oxygen Therapy (HBOT), Low Nickel Diet, and Metronidazole therapy.

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