microbiome signatures definitions

Metalloprotease

July 27, 2025

A metalloprotease, also termed a metalloproteinase, is an enzyme that catalyzes the hydrolysis of peptide bonds in proteins, relying on metal ions—most commonly zinc (Zn²⁺), but also calcium (Ca²⁺), manganese (Mn²⁺), or cobalt (Co²⁺)—as essential cofactors for its catalytic activity. Classified within the broader group of proteases (peptidases), metalloproteases are distinct due to their metal-ion […]

Last Updated: 2025-07-27

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Karen Pendergrass

Karen Pendergrass is a microbiome researcher specializing in microbiome-targeted interventions (MBTIs). She systematically analyzes scientific literature to identify microbial patterns, develop hypotheses, and validate interventions. As the founder of the Microbiome Signatures Database, she bridges microbiome research with clinical practice. In 2012, based on her own investigative research, she became the first documented case of FMT for Celiac Disease—four years before the first published case study.

A metalloprotease, also termed a metalloproteinase, is an enzyme that catalyzes the hydrolysis of peptide bonds in proteins, relying on metal ions—most commonly zinc (Zn²⁺), but also calcium (Ca²⁺), manganese (Mn²⁺), or cobalt (Co²⁺)—as essential cofactors for its catalytic activity. Classified within the broader group of proteases (peptidases), metalloproteases are distinct due to their metal-ion dependence, contrasting with other proteases that employ serine or cysteine residues for catalysis. Many feature a conserved metal-binding motif, such as the HEXXH sequence in matrix metalloproteases (MMPs), where the metal ion coordinates with amino acid residues to stabilize the enzyme-substrate complex and enable peptide bond cleavage. These enzymes are vital in processes like extracellular matrix remodeling, cell signaling, protein degradation, and microbial virulence, playing significant roles in both physiological events (e.g., wound healing) and pathological conditions (e.g., inflammation, cancer metastasis, and neurodegenerative diseases).

Zinc

Zinc is an essential trace element vital for cellular functions and microbiome health. It influences immune regulation, pathogen virulence, and disease progression in conditions like IBS and breast cancer. Pathogens exploit zinc for survival, while therapeutic zinc chelation can suppress virulence, rebalance the microbiome, and offer potential treatments for inflammatory and degenerative diseases.

Matrix Metalloproteinases (MMPs)

Matrix Metalloproteinases (MMPs) are zinc-dependent enzymes that regulate extracellular matrix remodeling, with critical roles in health, disease, and interactions with the microbiome.

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