Imbalance in the Gut Microbiota of Children With Autism Spectrum Disorders Original paper

Researched by:

  • Dr. Umar ID
    Dr. Umar

    User avatarClinical Pharmacist and Clinical Pharmacy Master’s candidate focused on antibiotic stewardship, AI-driven pharmacy practice, and research that strengthens safe and effective medication use. Experience spans digital health research with Bloomsbury Health (London), pharmacovigilance in patient support programs, and behavioral approaches to mental health care. Published work includes studies on antibiotic use and awareness, AI applications in medicine, postpartum depression management, and patient safety reporting. Developer of an AI-based clinical decision support system designed to enhance antimicrobial stewardship and optimize therapeutic outcomes.

    Read More

November 19, 2025

Researched by:

  • Dr. Umar ID
    Dr. Umar

    User avatarClinical Pharmacist and Clinical Pharmacy Master’s candidate focused on antibiotic stewardship, AI-driven pharmacy practice, and research that strengthens safe and effective medication use. Experience spans digital health research with Bloomsbury Health (London), pharmacovigilance in patient support programs, and behavioral approaches to mental health care. Published work includes studies on antibiotic use and awareness, AI applications in medicine, postpartum depression management, and patient safety reporting. Developer of an AI-based clinical decision support system designed to enhance antimicrobial stewardship and optimize therapeutic outcomes.

    Read More

Last Updated: 2021-01-01

Microbiome Signatures identifies and validates condition-specific microbiome shifts and interventions to accelerate clinical translation. Our multidisciplinary team supports clinicians, researchers, and innovators in turning microbiome science into actionable medicine.

Karen Pendergrass

Karen Pendergrass is a microbiome researcher specializing in microbiome-targeted interventions (MBTIs). She systematically analyzes scientific literature to identify microbial patterns, develop hypotheses, and validate interventions. As the founder of the Microbiome Signatures Database, she bridges microbiome research with clinical practice. In 2012, based on her own investigative research, she became the first documented case of FMT for Celiac Disease—four years before the first published case study.

Location
China
Sample Site
Feces
Species
Homo sapiens

What was studied?

This study investigated gut microbiota imbalance in ASD by analyzing fecal microbial composition in children diagnosed with autism spectrum disorder compared with healthy peers. Using 16S rRNA V3–V4 sequencing, the authors mapped microbial diversity, relative abundance, and taxonomic differences to determine whether gastrointestinal symptoms and microbial alterations were linked to ASD. The investigation explored alpha and beta diversity, performed principal coordinate analysis, and used LEfSe to identify discriminatory taxa. Visual data such as the rarefaction curves on page 4 and the phylum-level bar charts on page 6 highlight notable abundance differences between Actinobacteria, Firmicutes, and Bacteroidetes. The work aimed to clarify whether distinct microbial signatures could serve as biomarkers or potential mechanistic contributors within the microbiota–gut–brain axis.

Who was studied?

The study evaluated 25 children with ASD and 20 healthy controls recruited from Shengli Oil Field Central Hospital in China. All participants were of Han Chinese ethnicity and between roughly five and six years of age. Children with ASD were diagnosed using DSM-5 criteria and assessed with the Autism Treatment Evaluation Checklist. Gastrointestinal symptoms were documented using the GI Severity Index, revealing frequent constipation, abdominal pain, and diarrhea among ASD participants. Importantly, no children had used antibiotics, probiotics, or related medications within six months before sampling, reducing potential confounding effects on microbiome structure. Fresh fecal specimens were collected, stored at –80°C, and processed for DNA extraction and sequencing to ensure high-quality microbial profiling.

Most important findings

Children with ASD exhibited gut microbiota imbalance in ASD characterized by distinct taxonomic shifts rather than major changes in overall species richness. Alpha diversity indices (Shannon, Chao1, ACE) showed no significant group differences, yet beta diversity analysis demonstrated clear clustering separation, indicating altered community structure (page 5 PCA plot). Several genera—including Faecalibacterium, Prevotella, Subdoligranulum, and Ruminococcus—were more abundant in ASD, whereas Bifidobacterium was reduced. At the phylum level, ASD children showed higher Firmicutes and lower Actinobacteria relative to controls (page 6 phylum-level comparison). LEfSe results identified Ruminococcaceae and Firmicutes as ASD-enriched, while Actinobacteria taxa characterized controls. These shifts highlight altered butyrate-associated organisms, disruptions in SCFA-producing profiles, and changes that may influence immune signaling, intestinal barrier integrity, and gut–brain communication.

Key implications

The findings reinforce robust connections between gastrointestinal symptoms, microbial dysbiosis, and autism-related behavioral severity. Reduced Bifidobacterium levels, combined with elevated Faecalibacterium and Subdoligranulum, underscore potential disturbances in anti-inflammatory and metabolic pathways influencing neurodevelopment. The authors propose that gut microbiota could serve as future biomarkers and therapeutic targets, although population-specific factors such as geography and diet warrant caution when generalizing. Interventions aiming to modulate gut microbial composition—particularly strategies restoring beneficial Actinobacteria—may hold promise in managing ASD-associated symptoms.

Citation

Ding H, Yi X, Zhang X, Wang H, Liu H, Mou WW. Imbalance in the gut microbiota of children with autism spectrum disorders. Front Cell Infect Microbiol. 2021;11:572752. doi:10.3389/fcimb.2021.572752

Autism spectrum disorder (ASD)

Autism Spectrum Disorder (ASD) is a neurodevelopmental condition characterized by social, communication, and behavioral challenges. It involves genetic and environmental factors, including microbiome imbalances which influence symptom severity and overall health.

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