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1H NMR- based metabolomics approaches as non-invasive tools for diagnosis of endometriosis A Comparative Study of Blood Levels of Manganese, Some Macroelements and Heavy Metals in Obese and Non-Obese Polycystic Ovary Syndrome Patients A Comparative Study of the Gut Microbiota Associated With Immunoglobulin a Nephropathy and Membranous Nephropathy A comparative study of the gut microbiota in immune-mediated inflammatory diseases-does a common dysbiosis exist? A comprehensive analysis of breast cancer microbiota and host gene expression A comprehensive analysis of breast cancer microbiota and host gene expression A cross-sectional analysis about bacterial vaginosis, high-risk human papillomavirus infection, and cervical intraepithelial neoplasia in Chinese women A cross-sectional pilot study of birth mode and vaginal microbiota in reproductive-age women A metabonomics approach as a means for identification of potentialbiomarkers for early diagnosis of endometriosis A More Diverse Cervical Microbiome Associates with Better Clinical Outcomes in Patients with Endometriosis: A Pilot Study A Multi-Omic Systems-Based Approach Reveals Metabolic Markers of Bacterial Vaginosis and Insight into the Disease A New Approach to Polycystic Ovary Syndrome: The Gut Microbiota A Review of the Anti-inflammatory Properties of Clindamycin in the Treatment of Acne Vulgaris A Systematic Review and Meta-Analysis of Premenstrual Syndrome with Special Emphasis on Herbal Medicine and Nutritional Supplements. Adherence to the Mediterranean Diet, Dietary Patterns and Body Composition in Women with Polycystic Ovary Syndrome (PCOS)

Molecular detection of intrauterine microbial colonization in women with endometriosis Original paper

Researched by:

  • Kimberly Eyer ID
    Kimberly Eyer

    User avatarKimberly Eyer, a Registered Nurse with 30 years of nursing experience across diverse settings, including Home Health, ICU, Operating Room Nursing, and Research. Her roles have encompassed Operating Room Nurse, RN First Assistant, and Acting Director of a Same Day Surgery Center. Her specialty areas include Adult Cardiac Surgery, Congenital Cardiac Surgery, Vascular Surgery, and Neurosurgery.

May 19, 2025

  • Women’s Health
    Women’s Health

    Women’s health, a vital aspect of medical science, encompasses various conditions unique to women’s physiological makeup. Historically, women were often excluded from clinical research, leading to a gap in understanding the intricacies of women’s health needs. However, recent advancements have highlighted the significant role that the microbiome plays in these conditions, offering new insights and potential therapies. MicrobiomeSignatures.com is at the forefront of exploring the microbiome signature of each of these conditions to unravel the etiology of these diseases and develop targeted microbiome therapies.

  • Endometriosis
    Endometriosis

    Endometriosis involves ectopic endometrial tissue causing pain and infertility. Validated and Promising Interventions include Hyperbaric Oxygen Therapy (HBOT), Low Nickel Diet, and Metronidazole therapy.

Researched by:

  • Kimberly Eyer ID
    Kimberly Eyer

    User avatarKimberly Eyer, a Registered Nurse with 30 years of nursing experience across diverse settings, including Home Health, ICU, Operating Room Nursing, and Research. Her roles have encompassed Operating Room Nurse, RN First Assistant, and Acting Director of a Same Day Surgery Center. Her specialty areas include Adult Cardiac Surgery, Congenital Cardiac Surgery, Vascular Surgery, and Neurosurgery.

Last Updated: 2016

Microbiome Signatures identifies and validates condition-specific microbiome shifts and interventions to accelerate clinical translation. Our multidisciplinary team supports clinicians, researchers, and innovators in turning microbiome science into actionable medicine.

Karen Pendergrass

Karen Pendergrass is a microbiome researcher specializing in microbiome-targeted interventions (MBTIs). She systematically analyzes scientific literature to identify microbial patterns, develop hypotheses, and validate interventions. As the founder of the Microbiome Signatures Database, she bridges microbiome research with clinical practice. In 2012, based on her own investigative research, she became the first documented case of FMT for Celiac Disease—four years before the first published case study.

What Was Studied?

This study investigated the molecular detection of intrauterine microbial colonization in women with and without endometriosis, utilizing a 16S rDNA metagenome assay to evaluate bacterial presence in endometrial swabs and cystic fluid samples. The primary aim was to explore the role of microbial colonization in the intrauterine environment and its potential contribution to endometriosis pathogenesis, especially in women treated with gonadotropin-releasing hormone agonist (GnRHa). The study compared microbial communities in both endometrial tissue and cystic fluid derived from ovarian endometrioma and non-endometrioma cysts. The analysis aimed to validate the “bacterial contamination hypothesis,” which posits that microbial colonization might exacerbate inflammatory responses, contributing to endometriosis progression.

Who Was Studied?

The study included 32 women with endometriosis and 32 women without endometriosis. Among these, half of each group (16 women) received GnRHa treatment for 4–6 months prior to sample collection. Endometrial swabs and cystic fluid samples were collected during laparoscopic procedures at Nagasaki University. Women were included if they were of reproductive age, with regular menstrual cycles, and had not taken antibiotics or immunosuppressants within three months prior to the study. The endometriosis cases were confirmed histologically, and cystic fluids were categorized as either ovarian endometrioma (OE) or non-endometrioma (NE) cysts. The study employed 16S rDNA metagenome sequencing using the Illumina MiSeq system to identify bacterial taxa.

What Were the Most Important Findings?

The study identified a significant alteration in the microbial landscape within the intrauterine environment and ovarian cystic fluid of women with endometriosis, particularly those undergoing GnRHa treatment. Notably, there was a significant decrease in Lactobacillaceae populations (p <0.01) and a marked increase in Streptococcaceae, Staphylococcaceae, and Enterobacteriaceae (p <0.05 for each) in GnRHa-treated women with endometriosis. This microbial shift was associated with sub-clinical infection in the uterine cavity and cystic fluid of ovarian endometrioma. Furthermore, the 16S metagenome assay detected higher proportions of Streptococcaceae and Staphylococcaceae in ovarian endometrioma cyst fluid compared to non-endometrioma cysts, suggesting a unique microbial signature linked to inflammatory pathogenesis. Interestingly, traditional bacterial culture methods failed to detect colonies in the cystic fluids, while PCR analysis revealed substantial colonization. This discrepancy indicates that sub-clinical infections in the uterine and ovarian microenvironments may contribute to the chronic inflammatory state characteristic of endometriosis. The study also proposed that GnRHa-induced hypoestrogenism might reduce the expression of antimicrobial peptides in the genitourinary tract, facilitating microbial colonization and chronic inflammation.

ParameterFindings in Endometriosis Patients
Intrauterine Microbial ColonizationSignificant increase in Streptococcaceae, Staphylococcaceae, and Enterobacteriaceae populations in endometrial tissue and ovarian cystic fluid.
GnRHa Treatment EffectsDecrease in Lactobacillaceae populations (p <0.01) with elevated Streptococcaceae, Staphylococcaceae, and Enterobacteriaceae (p <0.05).
Cystic Fluid MicrobiomeHigher proportions of Streptococcaceae and Staphylococcaceae in ovarian endometrioma cyst fluid compared to non-endometrioma cysts.
Detection MethodsTraditional bacterial culture failed to detect colonies, but 16S rDNA sequencing revealed substantial colonization.
Hypothesized MechanismGnRHa-induced hypoestrogenism may suppress antimicrobial peptides, facilitating microbial colonization and chronic inflammation.
Pathogenic ImplicationsSuggests sub-clinical infection in uterine and ovarian environments as a contributor to chronic inflammation in endometriosis.
Therapeutic ConsiderationPotential for targeted antimicrobial therapy to mitigate microbial load and reduce inflammation in endometriosis.

What Are the Greatest Implications of This Study?

The findings provide robust evidence that intrauterine microbial colonization—particularly of Streptococcaceae, Staphylococcaceae, and Enterobacteriaceae—is prevalent in women with endometriosis and is significantly heightened with GnRHa treatment. This suggests that silent intrauterine infections could exacerbate inflammatory responses and potentially influence disease progression. Furthermore, the detection of bacterial DNA in ovarian endometrioma cystic fluid indicates that microbial colonization extends beyond the uterine environment, potentially affecting ovarian tissue integrity. These insights propose that targeted antimicrobial therapy might mitigate intrauterine bacterial load, reduce inflammation, and improve disease management. The study challenges the traditional view of the sterile uterine environment, suggesting that the bacterial contamination hypothesis should be revisited as a contributing factor in endometriosis pathogenesis.

Endometriosis

Endometriosis involves ectopic endometrial tissue causing pain and infertility. Validated and Promising Interventions include Hyperbaric Oxygen Therapy (HBOT), Low Nickel Diet, and Metronidazole therapy.

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