Multi-Omics Reveals that Lead Exposure Disturbs Gut Microbiome Development, Key Metabolites and Metabolic Pathways Original paper

Researched by:

  • Divine Aleru ID
    Divine Aleru

    User avatarI am a biochemist with a deep curiosity for the human microbiome and how it shapes human health, and I enjoy making microbiome science more accessible through research and writing. With 2 years experience in microbiome research, I have curated microbiome studies, analyzed microbial signatures, and now focus on interventions as a Microbiome Signatures and Interventions Research Coordinator.

    Read More

August 27, 2025

  • Metals
    Metals

    OverviewHeavy metals play a significant and multifaceted role in the pathogenicity of microbial species. Their involvement can be viewed from two primary perspectives: the toxicity of heavy metals to microbes and the exploitation of heavy metals by microbial pathogens to establish infections and evade the host immune response. Understanding these aspects is critical for both […]

Researched by:

  • Divine Aleru ID
    Divine Aleru

    User avatarI am a biochemist with a deep curiosity for the human microbiome and how it shapes human health, and I enjoy making microbiome science more accessible through research and writing. With 2 years experience in microbiome research, I have curated microbiome studies, analyzed microbial signatures, and now focus on interventions as a Microbiome Signatures and Interventions Research Coordinator.

    Read More

Last Updated: 2025-08-27

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Divine Aleru

I am a biochemist with a deep curiosity for the human microbiome and how it shapes human health, and I enjoy making microbiome science more accessible through research and writing. With 2 years experience in microbiome research, I have curated microbiome studies, analyzed microbial signatures, and now focus on interventions as a Microbiome Signatures and Interventions Research Coordinator.

What was studied?

This study used multi-omics approaches to investigate the effects of lead exposure on the gut microbiome and its metabolic functions in C57BL/6 mice. The researchers aimed to explore how lead exposure affects the diversity and structure of the gut microbiome and to assess the impact on key metabolites and metabolic pathways. Using 16S rRNA sequencing, whole-genome metagenomics sequencing, and gas chromatography-mass spectrometry (GC-MS) metabolomics, the study assessed the changes in microbial composition, gene content, and metabolite profiles. These approaches helped identify how lead exposure disrupts microbiome development and alters metabolic functions, particularly in relation to oxidative stress, energy metabolism, and nutrient metabolism, which may have important implications for lead toxicity in the host.

Who was studied?

The study focused on C57BL/6 female mice, which were exposed to lead chloride in their drinking water for 13 weeks. The mice were randomly assigned to either a control or a lead-treated group, and their gut microbiome was analyzed at multiple time points (baseline, 4 weeks, and 13 weeks post-exposure). The study examined the taxonomic structure of the gut microbiome using 16S rRNA sequencing and assessed the metabolic changes through metagenomics and metabolomics. The researchers also compared changes in the phylogenetic diversity and metabolic pathways of the gut bacteria between the control and lead-treated groups, providing insights into how lead exposure disturbs gut microbiome development over time.

Most important findings

The study revealed that lead exposure significantly disrupted the gut microbiome community structure, with lead-treated mice showing reduced phylogenetic diversity over time. At the earliest time point assessed (week 4), the lead-treated animals exhibited impaired microbial development, with much lower species richness compared to the control group. Lead exposure led to significant perturbations in key metabolites such as vitamin E (α-tocopherol, γ-tocopherol) and bile acids (cholic acid, ursodeoxycholic acid, deoxycholic acid), all of which were significantly reduced. This alteration in bile acid homeostasis could potentially affect lipid metabolism and gut health. The study also demonstrated that lead exposure disturbed nitrogen metabolism, with changes in gene expression related to urease activation and creatinine degradation, and energy metabolism, with an increase in saccharide transport and a decrease in key metabolites like glycerol-3-phosphate. Furthermore, lead exposure activated oxidative stress pathways, leading to the upregulation of genes involved in detoxification and defense mechanisms against oxidative damage. These findings underscore the broad impact of lead on the functional capacity of the gut microbiome and its related metabolic pathways.

Key implications

This study has significant implications for understanding how lead toxicity may impact human health, especially in relation to the gut microbiome. The disruption of microbial diversity and metabolism could play a role in lead-induced diseases, particularly those affecting the gastrointestinal and metabolic systems. From a clinical perspective, pediatric populations are particularly vulnerable to the effects of lead exposure, which can lead to long-term health consequences, including immune system dysregulation and metabolic disorders. This research also highlights the potential for using the gut microbiome as a biomarker to monitor the effects of heavy metal exposure. Furthermore, the study suggests that targeting the gut microbiome with probiotics or other microbiome-modulating therapies could be a viable strategy for mitigating the health effects of lead exposure. Finally, understanding the microbial and metabolic changes induced by lead provides a foundation for future research into how microbiome-based interventions might be used to protect against or reverse the detrimental effects of heavy metal toxicity.

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