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The role of the vaginal microbiome in distinguishing female chronic pelvic pain caused by endometriosis/adenomyosis Original paper

Researched by:

  • Kimberly Eyer ID
    Kimberly Eyer

    User avatarKimberly Eyer, a Registered Nurse with 30 years of nursing experience across diverse settings, including Home Health, ICU, Operating Room Nursing, and Research. Her roles have encompassed Operating Room Nurse, RN First Assistant, and Acting Director of a Same Day Surgery Center. Her specialty areas include Adult Cardiac Surgery, Congenital Cardiac Surgery, Vascular Surgery, and Neurosurgery.

May 17, 2025

  • Women’s Health
    Women’s Health

    Women’s health, a vital aspect of medical science, encompasses various conditions unique to women’s physiological makeup. Historically, women were often excluded from clinical research, leading to a gap in understanding the intricacies of women’s health needs. However, recent advancements have highlighted the significant role that the microbiome plays in these conditions, offering new insights and potential therapies. MicrobiomeSignatures.com is at the forefront of exploring the microbiome signature of each of these conditions to unravel the etiology of these diseases and develop targeted microbiome therapies.

  • Endometriosis
    Endometriosis

    Endometriosis involves ectopic endometrial tissue causing pain and infertility. Validated and Promising Interventions include Hyperbaric Oxygen Therapy (HBOT), Low Nickel Diet, and Metronidazole therapy.

  • Chronic Pelvic Pain (CPP)
    Chronic Pelvic Pain (CPP)

    Chronic Pelvic Pain (CPP) is persistent pain in the pelvic region lasting six months or longer, often multifactorial, impacting physical and emotional well-being, and associated with various medical conditions.

Researched by:

  • Kimberly Eyer ID
    Kimberly Eyer

    User avatarKimberly Eyer, a Registered Nurse with 30 years of nursing experience across diverse settings, including Home Health, ICU, Operating Room Nursing, and Research. Her roles have encompassed Operating Room Nurse, RN First Assistant, and Acting Director of a Same Day Surgery Center. Her specialty areas include Adult Cardiac Surgery, Congenital Cardiac Surgery, Vascular Surgery, and Neurosurgery.

Last Updated: 2024

Microbiome Signatures identifies and validates condition-specific microbiome shifts and interventions to accelerate clinical translation. Our multidisciplinary team supports clinicians, researchers, and innovators in turning microbiome science into actionable medicine.

Karen Pendergrass

Karen Pendergrass is a microbiome researcher specializing in microbiome-targeted interventions (MBTIs). She systematically analyzes scientific literature to identify microbial patterns, develop hypotheses, and validate interventions. As the founder of the Microbiome Signatures Database, she bridges microbiome research with clinical practice. In 2012, based on her own investigative research, she became the first documented case of FMT for Celiac Disease—four years before the first published case study.

What was studied?

This study investigated whether the composition of the vaginal microbiome could serve as a diagnostic biomarker to differentiate chronic pelvic pain (CPP) caused by endometriosis or adenomyosis (EM/AM) from other causes of chronic pelvic pain syndrome (CPPS) in women. Using 16S rRNA sequencing (V4 region), the researchers profiled the vaginal microbiota of 37 women with EM/AM-associated CPP, 25 with CPPS from other causes, and 66 healthy controls without CPPS. Additionally, the study explored whether combining vaginal microbial markers with serum CA125 could improve differential diagnostic accuracy.

Who was studied?

The study included 128 premenopausal women attending the gynecology department of Peking Union Medical College Hospital. These were stratified into three groups: 37 women with surgically confirmed EM/AM-associated CPP, 25 women with non-EM/AM CPPS (adhesions, hydrosalpinx, infertility), and 66 women without any chronic pelvic pain. All participants were HPV-negative, had not recently used antibiotics or vaginal products, and were matched for age, gravidity, parity, and contraceptive method to control for confounding variables.

What were the most important findings?

The vaginal microbiome of women with EM/AM-associated CPP exhibited significantly higher alpha diversity than those in the CPPS and healthy control groups. Taxonomic analyses revealed distinct microbial signatures: increased abundance of Clostridium butyricum, Clostridium disporicum, Alloscardovia omnicolens, and Veillonella montpellierensis, alongside a marked depletion of Lactobacillus jensenii, Lactobacillus reuteri, and Lactobacillus iners. These differentially abundant taxa serve as potential microbiome biomarkers.

Diagnostic performance analysis demonstrated that a combination of microbial biomarkers (specifically, a relative abundance of Clostridium disporicum >0.001105% and Lactobacillus reuteri<0.1911349%) yielded 81.08% sensitivity and 52% specificity for identifying EM/AM-associated CPP. When combined with serum CA125 levels, sensitivity increased to 89.19%, although specificity remained unchanged. Functional predictions via PICRUSt revealed enrichment of metabolic pathways such as amino acid metabolism, energy metabolism, and metabolism of cofactors and vitamins in EM/AM patients, along with downregulation of membrane transport and nucleotide metabolism compared to controls. These shifts may reflect microbial contributions to inflammation and pain signaling pathways implicated in EM/AM-associated CPP.

From a microbiome signature standpoint, the enriched taxa—particularly Clostridium disporicum and Alloscardovia omnicolens—emerge as Major Microbial Associations (MMAs) due to their consistent elevation in EM/AM patients. Conversely, Lactobacillus jensenii and L. reuteri, known for their protective, anti-inflammatory properties, are depleted, suggesting their role in maintaining vaginal eubiosis and preventing EM/AM-associated pathogenesis.

What are the greatest implications of this study?

This research provides compelling evidence that the vaginal microbiome harbors discriminative microbial signatures capable of differentiating EM/AM-associated CPP from other forms of chronic pelvic pain. The incorporation of specific microbial biomarkers, particularly when paired with serum CA125, may improve non-invasive diagnostic accuracy, enabling earlier and more targeted therapeutic intervention. Clinically, these findings underscore the potential of microbiome-informed diagnostics for gynecological conditions where conventional markers fall short. More broadly, this study suggests that vaginal dysbiosis, characterized by Lactobacillus depletion and enrichment of saccharolytic and anaerobic species, could be causally linked to EM/AM pathogenesis, possibly via inflammatory or metabolic pathways. Future studies incorporating metagenomic or metabolomic analyses are warranted to functionally validate these microbial associations and to explore the feasibility of microbial modulation as a therapeutic strategy.

Chronic Pelvic Pain (CPP)

Chronic Pelvic Pain (CPP) is persistent pain in the pelvic region lasting six months or longer, often multifactorial, impacting physical and emotional well-being, and associated with various medical conditions.

Endometriosis

Endometriosis involves ectopic endometrial tissue causing pain and infertility. Validated and Promising Interventions include Hyperbaric Oxygen Therapy (HBOT), Low Nickel Diet, and Metronidazole therapy.

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