Clindamycin is effective in treating bacterial vaginosis by reducing Gardnerella vaginalis and promoting Lactobacillus growth, but recurrence rates highlight the need for adjunct therapies targeting biofilms.

Validation of Clindamycin as a microbiome-targeted intervention for Bacterial Vaginosis

Researched by:

  • Divine Aleru ID
    Divine Aleru

    User avatarI am a biochemist with a deep curiosity for the human microbiome and how it shapes human health, and I enjoy making microbiome science more accessible through research and writing. With 2 years experience in microbiome research, I have curated microbiome studies, analyzed microbial signatures, and now focus on interventions as a Microbiome Signatures and Interventions Research Coordinator.

    Read More

May 15, 2025

Clindamycin is effective in treating bacterial vaginosis by reducing Gardnerella vaginalis and promoting Lactobacillus growth, but recurrence rates highlight the need for adjunct therapies targeting biofilms.

research-feed Research feed

Researched by:

  • Divine Aleru ID
    Divine Aleru

    User avatarI am a biochemist with a deep curiosity for the human microbiome and how it shapes human health, and I enjoy making microbiome science more accessible through research and writing. With 2 years experience in microbiome research, I have curated microbiome studies, analyzed microbial signatures, and now focus on interventions as a Microbiome Signatures and Interventions Research Coordinator.

    Read More

Last Updated: 2025-04-05

Microbiome Signatures identifies and validates condition-specific microbiome shifts and interventions to accelerate clinical translation. Our multidisciplinary team supports clinicians, researchers, and innovators in turning microbiome science into actionable medicine.

Divine Aleru

I am a biochemist with a deep curiosity for the human microbiome and how it shapes human health, and I enjoy making microbiome science more accessible through research and writing. With 2 years experience in microbiome research, I have curated microbiome studies, analyzed microbial signatures, and now focus on interventions as a Microbiome Signatures and Interventions Research Coordinator.

Overview

Clindamycin is a well-established antibiotic used to treat bacterial vaginosis (BV), a condition caused by an imbalance in the vaginal microbiota, particularly the overgrowth of anaerobic bacteria like Gardnerella vaginalis.[1] Clindamycin works by inhibiting protein synthesis in susceptible bacteria, targeting anaerobes and thus reducing G. vaginalis and other pathogenic species. This intervention targets the microbiome by explicitly acting on pathogenic bacteria while promoting a healthier microbial environment, particularly by supporting Lactobacillus species. However, biofilms and pathobionts persist, limiting clindamycin’s effects and contributing to BV recurrence. The clinical variability in treatment outcomes reinforces the need for adjunct therapies that target biofilm disruption and enhance the effectiveness of clindamycin in recurrent BV cases.[2]

Validation of Clindamycin as an MBTI

Clindamycin’s mechanism of action involves inhibiting bacterial protein synthesis by binding to the 50S subunit of the ribosome. This prevents bacterial cell growth and leads to the death of susceptible anaerobic bacteria. Studies have shown that clindamycin is particularly effective against Gardnerella vaginalis and other BV-associated anaerobic pathogens. It has demonstrated success in reducing G. vaginalis load and restoring Lactobacillus dominance, which is crucial for maintaining a healthy vaginal microbiota. Despite these effects, clindamycin’s efficacy varies, and many patients experience recurrence, often linked to biofilm formation and the persistence of pathobionts.[3] This indicates the need for treatments that target these biofilms or pathobionts to improve long-term outcomes. Clinical studies also suggest that clindamycin’s ability to promote Lactobacillus species could reinforce its role as a microbiome-targeted intervention (MBTI) for BV, but adjunct therapies may be necessary to address the recurrence associated with biofilms​.

Microbial Effects Summary Table

Microbial Effects of ClindamycinBV Microbiome Signature
Increased Lactobacillus speciesLactobacilli are diminished in BV
Reduced Gardnerella vaginalis and other anaerobesG. vaginalis and other anaerobes are predominant in BV
Reduction in microbial diversityIncreased microbial diversity in BV, including pathogenic species

Validation of the Microbiome Signature of BV

An overgrowth of anaerobic bacteria particularly Gardnerella vaginalis, and a reduction in Lactobacillus species, which maintain the vaginal ecosystem’s acidity, causes bacterial vaginosis. The microbiome signature of BV reflects the dominance of these anaerobes and reduced Lactobacillus populations.[4] Clindamycin’s effects on this microbial imbalance, by reducing G. vaginalis and promoting Lactobacillus growth, align with the correction of the BV microbiome signature. However, the persistence of pathogenic bacteria and biofilm formation remains a challenge, emphasizing the need for more targeted treatments to address these persistent factors.[5] While clindamycin restores some elements of a healthier microbiome, it does not fully resolve the microbial dysbiosis associated with BV in some patients.

Dual Validation Paragraph

The observed microbial shifts following clindamycin treatment, particularly the reduction in Gardnerella vaginalis and other anaerobic bacteria and the increase in Lactobacillus species, validate both clindamycin as a microbiome-targeted therapy and the microbiome signature of BV as clinically accurate.[6] Clindamycin reduces pathogenic anaerobes and promotes beneficial Lactobacillus, consistent with the microbial shifts expected in BV treatment. However, the recurrence of BV in many cases, especially in the presence of biofilm formation, indicates the need for adjunct therapies to target these biofilms and provide more long-term success. This reinforces the importance of considering the microbiome signature of BV when developing treatment strategies and improving patient outcomes​.

Research Feed

Single-Dose, Bioadhesive Clindamycin 2% Gel for Bacterial Vaginosis: A Randomized Controlled Trial
May 2, 2022
/
Bacterial Vaginosis
Bacterial Vaginosis

Did you know?
Bacterial vaginosis (BV) increases the risk of acquiring HIV by up to 60% in women due to the disruption of the protective vaginal microbiome and the resulting inflammation that facilitates the virus’s entry.

Alias iure reprehenderit aut accusantium. Molestiae dolore suscipit. Necessitatibus eum quaerat. Repudiandae suscipit quo necessitatibus. Voluptatibus ullam nulla temporibus nobis. Atque eaque sed totam est assumenda. Porro modi soluta consequuntur veritatis excepturi minus delectus reprehenderit est. Eveniet labore ut quas minima aliquid quibusdam. Vitae possimus fuga praesentium eveniet debitis exercitationem deleniti.

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Treatment of Bacterial Vaginosis with Topical Clindamycin or Metronidazole
September 1, 2005
/
Bacterial Vaginosis
Bacterial Vaginosis

Did you know?
Bacterial vaginosis (BV) increases the risk of acquiring HIV by up to 60% in women due to the disruption of the protective vaginal microbiome and the resulting inflammation that facilitates the virus’s entry.

Alias iure reprehenderit aut accusantium. Molestiae dolore suscipit. Necessitatibus eum quaerat. Repudiandae suscipit quo necessitatibus. Voluptatibus ullam nulla temporibus nobis. Atque eaque sed totam est assumenda. Porro modi soluta consequuntur veritatis excepturi minus delectus reprehenderit est. Eveniet labore ut quas minima aliquid quibusdam. Vitae possimus fuga praesentium eveniet debitis exercitationem deleniti.

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Microbiome Insiders can read two study summaries for any topic on Microbiome.

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Fighting polymicrobial biofilms in bacterial vaginosis
April 12, 2023
/
Bacterial Vaginosis
Bacterial Vaginosis

Did you know?
Bacterial vaginosis (BV) increases the risk of acquiring HIV by up to 60% in women due to the disruption of the protective vaginal microbiome and the resulting inflammation that facilitates the virus’s entry.

Alias iure reprehenderit aut accusantium. Molestiae dolore suscipit. Necessitatibus eum quaerat. Repudiandae suscipit quo necessitatibus. Voluptatibus ullam nulla temporibus nobis. Atque eaque sed totam est assumenda. Porro modi soluta consequuntur veritatis excepturi minus delectus reprehenderit est. Eveniet labore ut quas minima aliquid quibusdam. Vitae possimus fuga praesentium eveniet debitis exercitationem deleniti.

Create a free account to unlock this study summary.

Microbiome Insiders can read two study summaries for any topic on Microbiome.

(Get started with your free account)

Bacterial Vaginosis

Bacterial vaginosis (BV) is caused by an imbalance in the vaginal microbiota, where the typically dominant Lactobacillus species are significantly reduced, leading to an overgrowth of anaerobic and facultative bacteria.

Microbiome-Targeted Interventions (MBTIs)

Microbiome Targeted Interventions (MBTIs) are cutting-edge treatments that utilize information from Microbiome Signatures to modulate the microbiome, revolutionizing medicine with unparalleled precision and impact.

References

  1. Microbiologic Response to Treatment of Bacterial Vaginosis with Topical Clindamycin or Metronidazole. Austin MN, Beigi RH, Meyn LA, Hillier SL. (Metronidazole. J Clin Microbiol 43: 1 September 2005)
  2. Fighting polymicrobial biofilms in bacterial vaginosis. Sousa, L.G.V., Pereira, S.A. & Cerca, N.. (Microbial Biotechnology. 2023;16:1423–1437.)
  3. Fighting polymicrobial biofilms in bacterial vaginosis. Sousa, L.G.V., Pereira, S.A. & Cerca, N.. (Microbial Biotechnology. 2023;16:1423–1437.)
  4. Single-Dose, Bioadhesive Clindamycin 2% Gel for Bacterial Vaginosis. Mauck, Christine MD, MPH; Hillier, Sharon L. PhD; Gendreau, Judy MD; Dart, Clint MS; Chavoustie, Steven MD; Sorkin-Wells, Valerie MD; Nicholson-Uhl, Clifton MD; Perez, Brandon MD; Jacobs, Mark MD; Zack, Nadene MS; Friend, David PhD.. (Obstetrics & Gynecology 139(6):p 1092-1102, June 2022.)
  5. Fighting polymicrobial biofilms in bacterial vaginosis. Sousa, L.G.V., Pereira, S.A. & Cerca, N.. (Microbial Biotechnology. 2023;16:1423–1437.)
  6. Microbiologic Response to Treatment of Bacterial Vaginosis with Topical Clindamycin or Metronidazole. Austin MN, Beigi RH, Meyn LA, Hillier SL. (Metronidazole. J Clin Microbiol 43: 1 September 2005)

Austin MN, Beigi RH, Meyn LA, Hillier SL

Microbiologic Response to Treatment of Bacterial Vaginosis with Topical Clindamycin or Metronidazole

Metronidazole. J Clin Microbiol 43: 1 September 2005

Read Review

Sousa, L.G.V., Pereira, S.A. & Cerca, N.

Fighting polymicrobial biofilms in bacterial vaginosis

Microbial Biotechnology. 2023;16:1423–1437.

Read Review

Sousa, L.G.V., Pereira, S.A. & Cerca, N.

Fighting polymicrobial biofilms in bacterial vaginosis

Microbial Biotechnology. 2023;16:1423–1437.

Read Review

Mauck, Christine MD, MPH; Hillier, Sharon L. PhD; Gendreau, Judy MD; Dart, Clint MS; Chavoustie, Steven MD; Sorkin-Wells, Valerie MD; Nicholson-Uhl, Clifton MD; Perez, Brandon MD; Jacobs, Mark MD; Zack, Nadene MS; Friend, David PhD.

Single-Dose, Bioadhesive Clindamycin 2% Gel for Bacterial Vaginosis

Obstetrics & Gynecology 139(6):p 1092-1102, June 2022.

Read Review

Sousa, L.G.V., Pereira, S.A. & Cerca, N.

Fighting polymicrobial biofilms in bacterial vaginosis

Microbial Biotechnology. 2023;16:1423–1437.

Read Review

Austin MN, Beigi RH, Meyn LA, Hillier SL

Microbiologic Response to Treatment of Bacterial Vaginosis with Topical Clindamycin or Metronidazole

Metronidazole. J Clin Microbiol 43: 1 September 2005

Read Review
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