Metalloproteinases MMP

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Matrix Metalloproteinases (MMPs) can be co-opted by pathogens to facilitate infection and tissue invasion.

Matrix Metalloproteinases (MMPs)

Researched by:

  • Karen Pendergrass ID
    Karen Pendergrass

    User avatarKaren Pendergrass is a microbiome researcher specializing in microbiome-targeted interventions (MBTIs). She systematically analyzes scientific literature to identify microbial patterns, develop hypotheses, and validate interventions. As the founder of the Microbiome Signatures Database, she bridges microbiome research with clinical practice. In 2012, based on her own investigative research, she became the first documented case of FMT for Celiac Disease—four years before the first published case study.

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July 27, 2025

Matrix Metalloproteinases (MPs) are zinc-dependent enzymes that regulate extracellular matrix remodeling, with critical roles in health, disease, and interactions with the microbiome.

Researched by:

  • Karen Pendergrass ID
    Karen Pendergrass

    User avatarKaren Pendergrass is a microbiome researcher specializing in microbiome-targeted interventions (MBTIs). She systematically analyzes scientific literature to identify microbial patterns, develop hypotheses, and validate interventions. As the founder of the Microbiome Signatures Database, she bridges microbiome research with clinical practice. In 2012, based on her own investigative research, she became the first documented case of FMT for Celiac Disease—four years before the first published case study.

    Read More

Last Updated: 2024-11-22

Microbiome Signatures identifies and validates condition-specific microbiome shifts and interventions to accelerate clinical translation. Our multidisciplinary team supports clinicians, researchers, and innovators in turning microbiome science into actionable medicine.

Karen Pendergrass

Karen Pendergrass is a microbiome researcher specializing in microbiome-targeted interventions (MBTIs). She systematically analyzes scientific literature to identify microbial patterns, develop hypotheses, and validate interventions. As the founder of the Microbiome Signatures Database, she bridges microbiome research with clinical practice. In 2012, based on her own investigative research, she became the first documented case of FMT for Celiac Disease—four years before the first published case study.

Overview

Matrix Metalloproteinases (MMPs) are a family of zinc-dependent proteolytic enzymes critical for the degradation and remodeling of extracellular matrix (ECM) components. These enzymes are essential for normal physiological processes, such as wound healing, tissue remodeling, and angiogenesis. However, dysregulated MMP activity is implicated in pathological conditions, including chronic inflammation, cancer, cardiovascular diseases, and microbial dysbiosis.

Structure and Regulation

MMPs are initially synthesized as inactive zymogens (pro-MMPs) and require proteolytic activation to function. Their activity is tightly regulated by tissue inhibitors of metalloproteinases (TIMPs), ensuring precise ECM remodeling. Factors influencing MMP activity include cytokines, growth factors, oxidative stress, and microbial metabolites. Zinc and calcium ions are critical cofactors for their catalytic activity.

Families and Specific Types of MMPs

Matrix metalloproteinases (MMPs) are a family of zinc-dependent endopeptidases categorized based on both their substrate specificity and structural domains. Collagenases such as MMP-1 and MMP-8 are specialized for cleaving fibrillar collagens. These collagens are critical components of structural connective tissues. Gelatinases, including MMP-2 and MMP-9, target denatured collagens (gelatin) and type IV collagen. They play central roles in basement membrane degradation. Stromelysins like MMP-3 and MMP-10 exhibit broader substrate specificity. They degrade various non-collagenous components of the extracellular matrix (ECM), including proteoglycans and laminin. Membrane-type MMPs, exemplified by MMP-14, are anchored to the cell surface. They regulate localized ECM turnover. This facilitates cell migration and invasion. These distinctions are critical for understanding MMP function in physiological processes such as tissue remodeling. They are also important for understanding pathological conditions like cancer, fibrosis, and inflammatory diseases.


MMP CategorySubstrates and Functions
CollagenasesMMP-1, MMP-8 target fibrillar collagens (e.g., types I, II, III).
GelatinasesMMP-2, MMP-9 degrade gelatin and type IV collagen, primarily in basement membranes.
StromelysinsMMP-3, MMP-10 act on proteoglycans, laminin, fibronectin, and non-collagenous ECM proteins.
Membrane-Type MMPsMMP-14 is tethered to the cell surface and modulates ECM remodeling in pericellular spaces.

Role in Disease Pathophysiology

Matrix Metalloproteinases (MMPs) are elevated in various inflammatory and chronic diseases. These include inflammatory bowel disease (IBD), periodontitis, and rheumatoid arthritis. In such disorders, they contribute to extracellular matrix (ECM) breakdown and perpetuate inflammation. In gingivitis, MMPs play a critical role in tissue damage and are often influenced by oral dysbiosis. In cancer, MMPs facilitate tumor invasion, angiogenesis, and metastasis through ECM degradation. MMP-9 and MMP-14 are particularly implicated in cancer progression. Furthermore, dysregulated MMP activity is linked to neuroinflammation, blood-brain barrier disruption, and neurodegeneration. These occur in neurological disorders such as Alzheimer’s and Parkinson’s disease.

Microbiome-Specific Insights

Matrix metalloproteinases (MMPs) play a paradoxical role in host–microbe interactions. They act both as crucial mediators of tissue remodeling and as potential facilitators of pathogenic invasion. Pathogens, including certain bacteria and viruses, can hijack MMP pathways to degrade the extracellular matrix (ECM). This enables tissue penetration and systemic dissemination. For example, lipopolysaccharides (LPS) from Gram-negative bacteria are known to induce MMP-9 expression during inflammatory responses, amplifying tissue degradation. In the context of microbial biofilms, Matrix metalloproteinases (MMPs) may either degrade the biofilm-associated ECM or be subverted by microbes to breach host barriers. This complex interplay underscores the importance of considering MMP activity in clinical evaluations of infectious and inflammatory conditions. This is particularly true where microbial imbalances are suspected.

Zinc

Zinc is an essential trace element vital for cellular functions and microbiome health. It influences immune regulation, pathogen virulence, and disease progression in conditions like IBS and breast cancer. Pathogens exploit zinc for survival, while therapeutic zinc chelation can suppress virulence, rebalance the microbiome, and offer potential treatments for inflammatory and degenerative diseases.

Lipopolysaccharide (LPS)

Lipopolysaccharide (LPS), a potent endotoxin present in the outer membrane of Gram-negative bacteria that causes chronic immune responses associated with inflammation.

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