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1H NMR- based metabolomics approaches as non-invasive tools for diagnosis of endometriosis A Comparative Study of Blood Levels of Manganese, Some Macroelements and Heavy Metals in Obese and Non-Obese Polycystic Ovary Syndrome Patients A Comparative Study of the Gut Microbiota Associated With Immunoglobulin a Nephropathy and Membranous Nephropathy A comparative study of the gut microbiota in immune-mediated inflammatory diseases-does a common dysbiosis exist? A comprehensive analysis of breast cancer microbiota and host gene expression A comprehensive analysis of breast cancer microbiota and host gene expression A cross-sectional analysis about bacterial vaginosis, high-risk human papillomavirus infection, and cervical intraepithelial neoplasia in Chinese women A cross-sectional pilot study of birth mode and vaginal microbiota in reproductive-age women A metabonomics approach as a means for identification of potentialbiomarkers for early diagnosis of endometriosis A More Diverse Cervical Microbiome Associates with Better Clinical Outcomes in Patients with Endometriosis: A Pilot Study A Multi-Omic Systems-Based Approach Reveals Metabolic Markers of Bacterial Vaginosis and Insight into the Disease A New Approach to Polycystic Ovary Syndrome: The Gut Microbiota A Review of the Anti-inflammatory Properties of Clindamycin in the Treatment of Acne Vulgaris A Systematic Review and Meta-Analysis of Premenstrual Syndrome with Special Emphasis on Herbal Medicine and Nutritional Supplements. Adherence to the Mediterranean Diet, Dietary Patterns and Body Composition in Women with Polycystic Ovary Syndrome (PCOS)
Zinc and microbiome

Did you know?
Zinc is so critical to life that some pathogens, like Staphylococcus aureus, evolved specialized “zinc theft” systems to hijack it from human cells, while your immune system fights back by starving them with zinc-sequestering proteins like calprotectin. This nutrient tug-of-war is a microscopic battle that can determine the outcome of an infection!

Zinc

Researched by:

  • Karen Pendergrass ID
    Karen Pendergrass

    User avatarKaren Pendergrass is a microbiome researcher specializing in microbiome-targeted interventions (MBTIs). She systematically analyzes scientific literature to identify microbial patterns, develop hypotheses, and validate interventions. As the founder of the Microbiome Signatures Database, she bridges microbiome research with clinical practice. In 2012, based on her own investigative research, she became the first documented case of FMT for Celiac Disease—four years before the first published case study.

Fact-checked by:

  • Karen Pendergrass ID
    Karen Pendergrass

    User avatarKaren Pendergrass is a microbiome researcher specializing in microbiome-targeted interventions (MBTIs). She systematically analyzes scientific literature to identify microbial patterns, develop hypotheses, and validate interventions. As the founder of the Microbiome Signatures Database, she bridges microbiome research with clinical practice. In 2012, based on her own investigative research, she became the first documented case of FMT for Celiac Disease—four years before the first published case study.

April 21, 2025

Zinc is an essential trace element vital for cellular functions and microbiome health. It influences immune regulation, pathogen virulence, and disease progression in conditions like BS and breast cancer. Pathogens exploit zinc for survival, while therapeutic zinc chelation can suppress virulence, rebalance the microbiome, and offer potential treatments for inflammatory and degenerative diseases.

research-feed Research feed

Researched by:

  • Karen Pendergrass ID
    Karen Pendergrass

    User avatarKaren Pendergrass is a microbiome researcher specializing in microbiome-targeted interventions (MBTIs). She systematically analyzes scientific literature to identify microbial patterns, develop hypotheses, and validate interventions. As the founder of the Microbiome Signatures Database, she bridges microbiome research with clinical practice. In 2012, based on her own investigative research, she became the first documented case of FMT for Celiac Disease—four years before the first published case study.

Fact-checked by:

  • Karen Pendergrass ID
    Karen Pendergrass

    User avatarKaren Pendergrass is a microbiome researcher specializing in microbiome-targeted interventions (MBTIs). She systematically analyzes scientific literature to identify microbial patterns, develop hypotheses, and validate interventions. As the founder of the Microbiome Signatures Database, she bridges microbiome research with clinical practice. In 2012, based on her own investigative research, she became the first documented case of FMT for Celiac Disease—four years before the first published case study.

Last Updated: December 1, 2024

Microbiome Signatures identifies and validates condition-specific microbiome shifts and interventions to accelerate clinical translation. Our multidisciplinary team supports clinicians, researchers, and innovators in turning microbiome science into actionable medicine.

Karen Pendergrass

Karen Pendergrass is a microbiome researcher specializing in microbiome-targeted interventions (MBTIs). She systematically analyzes scientific literature to identify microbial patterns, develop hypotheses, and validate interventions. As the founder of the Microbiome Signatures Database, she bridges microbiome research with clinical practice. In 2012, based on her own investigative research, she became the first documented case of FMT for Celiac Disease—four years before the first published case study.

Overview

Zinc homeostasis is essential for cellular functions, including proliferation, apoptosis, and immune regulation, and its dysregulation is implicated in diseases such as endometriosis, Parkinson’s disease, multiple sclerosis (MS), irritable bowel syndrome (IBS), and breast cancer. Zinc’s role in these conditions extends to modulating oxidative stress, inflammation, and microbial dynamics. Research into zinc transporters, metalloproteins, and zinc-related microbial interactions offers new diagnostic and therapeutic opportunities, particularly in diseases influenced by the microbiome.

Pathogens

Zinc is an essential trace element for many pathogenic microorganisms, acting as a co-factor for enzymes, structural proteins, and transcriptional regulators. Pathogens compete with the host for zinc using specialized transport systems and binding proteins, which are integral to their virulence. For example, Escherichia coli and Salmonella stabilize enzymes critical for colonization with zinc, while Staphylococcus aureus relies on zinc-dependent matrix metalloproteinases (MMPs) for toxin production and immune evasion. Hosts counteract these strategies through nutritional immunity, employing zinc-sequestering proteins like calprotectin to limit zinc availability. Understanding pathogen-specific zinc dependencies is pivotal for designing interventions to impair their growth and virulence.

What pathogens have zinc requirements for virulence factors?

PathogenZinc Requirements and Associated Virulence Factors
Staphylococcus aureus
Requires zinc for metalloprotease activity, toxin production, and immune evasion. Uses specialized zinc transporters (e.g., AdcA and AdcAII) to overcome host zinc sequestration.
Escherichia coli
Relies on zinc to stabilize enzymes involved in DNA replication, metabolism, and oxidative stress resistance. Zinc acquisition systems (e.g., ZnuABC) are critical for colonization.
Salmonella enterica
Utilizes zinc for key metabolic enzymes and effector proteins during infection. Zinc transport systems like ZnuABC are essential for survival within macrophages.
Helicobacter pylori
Requires zinc for urease activity, which neutralizes stomach acid and facilitates colonization of the gastric mucosa.
Pseudomonas aeruginosa
Uses zinc for quorum sensing, biofilm formation, and zinc-dependent enzymes like elastase, which degrade host tissues and enhance infection.
Clostridium difficileZinc enhances spore germination and toxin production. Host zinc supplementation has been linked to increased C. difficile virulence.
Candida albicans
Requires zinc for fungal morphogenesis, adhesion, and biofilm formation. Competes with the host for zinc using zinc transporters (e.g., ZRT1 and ZRT2).
Neisseria gonorrhoeaeZinc is critical for oxidative stress resistance and survival in host tissues. Zinc uptake systems (e.g., TdfH) enable the pathogen to evade host immune defenses.
Mycobacterium tuberculosisZinc is required for enzymes involved in lipid metabolism and persistence in host macrophages. Sequesters zinc using transporters to overcome host-imposed zinc limitation.
Klebsiella pneumoniaeRelies on zinc for biofilm formation and immune evasion. Zinc-binding proteins and transporters facilitate acquisition in zinc-limited environments.

Zinc and the Microbiome

Zinc availability directly influences the composition and function of the microbiome. Beneficial microbes, such as Bacteroides and Lactobacillus, are less dependent on zinc, while pathogenic species exploit zinc to fuel virulence and colonization. Zinc chelation can modulate microbial dynamics by suppressing pathogenic species, reducing virulence factor activity, and restoring microbial balance in conditions like irritable bowel syndrome (IBS) and dysbiosis. However, excessive zinc chelation may inadvertently impair beneficial microbes and host zinc homeostasis, emphasizing the need for targeted therapeutic approaches.

Zinc as a Co-Factor

Zinc is essential for the activity of matrix metalloproteinases (MMPs), which degrade and remodel extracellular matrices and support angiogenesis, tumor invasion, and metastasis. Overexpression of MMPs, driven by zinc dysregulation, is frequently observed in aggressive cancers, including breast cancer. Targeting zinc-dependent enzymes offers a promising therapeutic avenue to mitigate tumor invasion and progression.

Chelation

Zinc chelation alters the microbiome by selectively reducing zinc availability, which can suppress zinc-dependent pathogenic microbes, reduce virulence factor activity, and rebalance microbial composition. However, the effects are context-dependent, and careful modulation of zinc levels is necessary to avoid impairing beneficial microbes or host functions. This approach holds promise for therapeutic interventions in microbiome-associated diseases, such as IBS, infections, and dysbiosis. Several zinc chelators, particularly Clioquinol, TPEN, and hydroxamic acids, have been investigated for their potential therapeutic effects in zinc-mediated inflammatory and degenerative conditions. Below is a detailed review of their clinical or preclinical exploration in these conditions.

What zinc chelators have been clinically investigated?

ChelatorConditions Investigated
Clioquinol
Early-phase clinical trials for neurodegenerative diseases (e.g., Parkinson’s, Alzheimer’s, MS). Chelates zinc and copper to disrupt pathological metal accumulation, reduce oxidative stress, and prevent alpha-synuclein aggregation. Also inhibits zinc-dependent MMPs in breast cancer, potentially reducing tumor invasion.
TPEN
Extensively used in research for neurodegenerative diseases (e.g., MS, Parkinson’s) and cancer. Reduces zinc-mediated oxidative stress and inflammation. In breast cancer, TPEN disrupts zinc-dependent processes such as cell proliferation and metastasis. Not yet progressed to clinical trials due to lack of specificity.
Hydroxamic Acids
FDA-approved for cancers like cutaneous T-cell lymphoma. Targets zinc-dependent histone deacetylases (HDACs), which regulate gene expression. Experimental use in neuroinflammatory conditions (e.g., MS, Parkinson’s) shows promise due to anti-inflammatory and neuroprotective effects.
EDTA Used in heavy metal detoxification and research. Reduces zinc levels in the gut to influence microbial composition and inflammation in IBS and colorectal diseases. Chelates metals, including zinc, in neurodegenerative diseases such as Parkinson’s. Limited clinical utility due to non-specific activity and potential toxicity.

FAQs

What is calprotectin, and how does it affect zinc availability?

Calprotectin is a protein released by immune cells during inflammation that sequesters zinc, starving pathogens of this essential nutrient. This process, part of “nutritional immunity,” helps inhibit microbial growth but may also impact host zinc levels and microbiome composition.

Can zinc supplementation worsen infections like Clostridium difficile?

Yes, excessive zinc can enhance the virulence of Clostridium difficile by promoting spore germination and toxin production. This highlights the importance of balanced zinc levels in preventing microbial overgrowth.

What is the role of zinc in neurodegenerative diseases?

Zinc accumulation in the brain contributes to oxidative stress, protein aggregation (e.g., alpha-synuclein in Parkinson’s), and inflammation. Therapeutic zinc chelation aims to mitigate these effects and protect neurons.

How does albumin influence zinc metabolism?

Albumin is the primary protein that binds and transports zinc in the bloodstream. It regulates zinc’s bioavailability to tissues and plays a crucial role in maintaining zinc homeostasis, particularly during inflammation or disease states.

In a state of hypoalbuminemia, is it better to supplement zinc or chelate it?

In hypoalbuminemia, deciding whether to supplement or chelate zinc depends on the clinical context and the underlying cause of the condition. Zinc supplementation is typically appropriate when tissue-level zinc deficiency arises from malnutrition, chronic liver disease, or protein loss due to inflammation. Supplementing zinc can restore essential zinc-dependent cellular functions, support enzymatic activity, and improve immune responses and tissue repair, making it particularly beneficial in wound healing or chronic illness.

On the other hand, zinc chelation may be necessary in cases of excessive zinc accumulation that contributes to disease pathology, such as enhanced pathogen virulence or inflammatory cascades. Chelation can also be effective in rebalancing the microbiome when zinc drives pathogenic overgrowth, as seen in conditions like Clostridium difficile infections.

To guide these interventions, clinicians and researchers should carefully assess zinc status through serum and tissue zinc levels alongside clinical presentation. Addressing the root cause of hypoalbuminemia, whether liver disease, malnutrition, or another factor, is crucial for achieving long-term zinc homeostasis. Collaboration across specialties, including input from dietitians, gastroenterologists, and microbiome experts, ensures a tailored and effective approach to zinc management.

How do zinc aspartate and zinc oxide differ in their effects?

The differential effects of zinc aspartate and zinc oxide in MS are attributed to differences in bioavailability, pharmacokinetics, and their impact on immune modulation, oxidative stress, and the gut microbiome. Choosing the appropriate zinc formulation is critical for optimizing therapeutic outcomes in patients.

Zinc Aspartate vs. Zinc Oxide, which should I choose for MS?

When considering zinc supplementation in multiple sclerosis (MS), zinc aspartate emerges as the superior choice due to its high bioavailability, efficient absorption, and targeted delivery to tissues. It supports immune modulation, reduces oxidative stress, and helps maintain gut microbiota balance, making it beneficial for repairing myelin, protecting neurons, and reducing systemic inflammation. In contrast, zinc oxide’s poor solubility and low bioavailability limit its therapeutic potential, as it disrupts zinc homeostasis, exacerbates gut dysbiosis, and increases oxidative stress, which may worsen MS pathology. This distinction is particularly relevant given that the microbiome signature of MS includes many pathogens with zinc transporter systems or matrix metalloproteinases (MMPs) that exploit zinc to enhance their virulence, further underscoring the need for careful zinc formulation selection for this autoimmune condition.

Research Feed

Higher incidence of zinc and nickel hypersensitivity in patients with irritable bowel syndrome
August 20, 2019
/
Metals
Metals

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The study highlights a potential immune-mediated link between hypersensitivity to dental metals, particularly zinc and nickel, and the pathogenesis of IBS in a subset of patients. The findings suggest that metal hypersensitivity may contribute to the mucosal inflammation observed in IBS patients.

What was studied?

This study investigated the incidence of hypersensitivity to dental metals—specifically zinc, nickel, gold, and palladium—in patients with Irritable Bowel Syndrome (IBS). The study aimed to assess whether hypersensitivity to these metals, which are commonly used in dental prostheses, could be linked to immune activation in IBS patients. The focus was on understanding how metal-induced hypersensitivity may contribute to the low-grade mucosal inflammation observed in a subset of IBS patients.

Who was studied?

The study recruited 147 Japanese patients diagnosed with IBS according to the Rome IV diagnostic criteria and 22 healthy controls (HC). The IBS patients were classified into four subtypes:

IBS-D (diarrhea-predominant IBS): 59 patients (40.1%)
IBS-C (constipation-predominant IBS): 9 patients (6.1%)
IBS-M (IBS with mixed bowel habits): 66 patients (44.9%)
IBS-U (unspecified IBS): 13 patients (8.8%)

The subjects underwent the drug-induced lymphocyte stimulation test (DLST) to detect hypersensitivity to the metals examined quantitatively.

What were the most important findings?

Increased hypersensitivity in IBS patients: 56.5% of IBS patients demonstrated hypersensitivity to at least one metal species, compared to only 31.8% of healthy controls.

Higher sensitivity to zinc and nickel: A significant portion of IBS patients was hypersensitive to zinc (36.4%) and nickel (39.6%), whereas none of the healthy controls exhibited hypersensitivity to zinc, and only 21.1% showed sensitivity to nickel.

Severe sensitivity: IBS patients had a significantly higher stimulation index (SI) for both zinc and nickel compared to healthy controls.

No significant difference across IBS subtypes: There was no significant difference in metal hypersensitivity rates or SI values across different IBS subtypes (IBS-D, IBS-C, IBS-M, IBS-U).

What are the greatest implications of this study?

The study highlights a potential immune-mediated link between hypersensitivity to dental metals, particularly zinc and nickel, and the pathogenesis of IBS in a subset of patients. The findings suggest that metal hypersensitivity may contribute to the mucosal inflammation observed in IBS patients. This pilot study underscores the importance of considering hypersensitivity reactions as part of IBS management, potentially leading to personalized treatment approaches, such as dietary modifications like a low-nickel diet, or avoiding exposure to specific metals in dental materials.

 
 
 
 
Exploring the link between dietary zinc intake and endometriosis risk: insights from a cross-sectional analysis of American women
October 23, 2024
/
Endometriosis
Endometriosis

Did you know?
Gut microbiota predict endometriosis better than vaginal microbiota.

STOPs
STOPs

Did you know?
The radical mastectomy for breast cancer was standard practice for nearly 60 years before less invasive options were proven effective.

 

This study links higher dietary zinc intake with increased endometriosis risk among American women, highlighting zinc’s complex role in immune modulation and estrogen-related pathways. Findings emphasize the importance of balanced intake for managing endometriosis risk.

What was studied?

This study investigated the association between dietary zinc intake and the risk of endometriosis among American women. Using cross-sectional data from the National Health and Nutrition Examination Survey (NHANES) collected between 1999 and 2006, the researchers aimed to evaluate whether zinc intake, as a key nutritional factor, was linked to the prevalence of endometriosis. Zinc is known for its essential roles in immune modulation, antioxidative defense, and regulation of matrix metalloproteinases (MMPs), all of which are implicated in endometriosis progression.

Who was studied?

The study included 4,315 American women aged 20–54 years, of whom 331 were diagnosed with endometriosis based on self-reported doctor diagnoses. Participants’ dietary zinc intake was assessed using 24-hour dietary recall interviews, with additional data on demographics, lifestyle, and health covariates collected. Women with extreme caloric intakes or incomplete data were excluded to ensure robustness of results.

What were the most important findings?

The study revealed a positive correlation between higher dietary zinc intake and the risk of endometriosis. Women consuming over 14 mg/day of zinc had a significantly higher adjusted odds ratio (1.60, 95% CI: 1.12–2.27, p = 0.009) compared to those with intake ≤8 mg/day. Zinc’s dual role in immune modulation and antioxidative defense was emphasized, particularly its regulation of matrix metalloproteinases (MMPs) like MMP-2 and MMP-9, which are key enzymes in tissue remodeling and endometriotic lesion invasion. Interestingly, despite zinc’s known antioxidative and anti-inflammatory roles, excessive intake appeared to have a counterproductive effect. These nuanced findings highlight zinc’s complex role in endometriosis pathophysiology.

What are the greatest implications of this study?

This research underscores the potential for dietary zinc as both a marker and modifiable factor in endometriosis risk. It raises questions about zinc’s dualistic effects, where optimal levels may support immune health, but excess intake could exacerbate estrogen-related pathways in endometriosis. Clinicians should be cautious when recommending zinc supplementation for reproductive health, particularly in populations at risk for endometriosis. Furthermore, this study strengthens the biological plausibility of microbiome involvement in endometriosis, as zinc is a crucial cofactor for microbial activity, and its imbalance may alter the gut and pelvic microbiota implicated in the disease.

The Association between Zinc and Copper Circulating Levels and Cardiometabolic Risk Factors in Adults: A Study of Qatar Biobank Data
August 9, 2021
/
Cardiovascular Health
Cardiovascular Health

Did you know?
Gut microbiota-derived metabolite trimethylamine N-oxide (TMAO) is strongly linked to cardiovascular disease, potentially influencing atherosclerosis more than cholesterol, making the gut microbiome a key therapeutic target.

 

 

Metals
Metals

Lorem ipsum dolor sit amet, consectetur adipiscing elit. Proin ut laoreet tortor. Donec euismod fermentum pharetra. Nullam at tristique enim. In sit amet molestie

This study evaluated the associations of zinc, copper, and Zn/Cu ratio with cardiometabolic risk factors in Qatari adults, revealing copper’s protective role and Zn/Cu ratio’s adverse implications for metabolic health.

What was studied?

This study analyzed the relationship between zinc (Zn), copper (Cu), and the zinc-to-copper (Zn/Cu) ratio with cardiometabolic risk (CMR) factors and metabolic syndrome (MetS) using data from the Qatar Biobank. It sought to determine whether circulating levels of these trace minerals and their ratios were associated with various markers of cardiometabolic health, including lipid profiles, blood pressure, glucose levels, and body composition.

Who was studied?

The study included 437 Qatari adults aged 18 and older, representing both sexes. Participants had detailed cardiometabolic and mineral status profiles measured. Individuals with non-communicable diseases, those taking mineral supplements, and pregnant or lactating women were excluded to ensure a clear analysis of trace mineral associations with CMR factors.

Key Findings

This study revealed several associations between trace mineral levels and cardiometabolic markers. High Cu levels were associated with a reduced risk of MetS, lower diastolic blood pressure (DBP), and decreased prevalence of low HDL cholesterol, suggesting a protective role of copper in cardiometabolic health. Conversely, a higher Zn/Cu ratio was linked to an increased risk of MetS and low HDL, indicating that imbalances in these trace elements could worsen metabolic health.

While Zn alone was not strongly correlated with MetS or most CMR factors, it showed weak positive correlations with waist circumference (WC) and triglycerides (TG), which are notable for metabolic processes. Cu, on the other hand, positively correlated with HDL and total cholesterol (TC) while negatively correlating with DBP. These findings emphasize the differential and sometimes opposing roles of these minerals in cardiometabolic regulation.

In terms of microbiome relevance, trace elements like Zn and Cu influence microbial composition and metabolic functions. For example, Zn deficiency can affect glucose metabolism and inflammation, while Cu is a cofactor for antioxidative enzymes like superoxide dismutase, influencing oxidative stress pathways. Dysregulation of these pathways is often linked to microbial dysbiosis, potentially contributing to MetS and other cardiometabolic conditions.

Greatest Implications

The results underscore the need to consider trace element levels, particularly Cu and the Zn/Cu ratio, in cardiometabolic health assessments. The findings suggest that higher Cu levels confer protective effects against MetS and DBP, whereas an elevated Zn/Cu ratio increases the risk of adverse outcomes, including low HDL and MetS. These insights could inform clinical interventions, such as dietary adjustments or supplementation, to balance trace mineral levels and support cardiometabolic health. Additionally, these results highlight the potential role of trace mineral modulation as part of microbiome-targeted therapies, given their influence on systemic inflammation and metabolism.

Endometriosis

Endometriosis involves ectopic endometrial tissue causing pain and infertility. Validated and Promising Interventions include Hyperbaric Oxygen Therapy (HBOT), Low Nickel Diet, and Metronidazole therapy.

Irritable Bowel Syndrome (IBS)

Irritable Bowel Syndrome (IBS) is a common gastrointestinal disorder characterized by symptoms such as abdominal pain, bloating, and altered bowel habits. Recent research has focused on the gut microbiota's role in IBS, aiming to identify specific microbial signatures associated with the condition.

Matrix Metalloproteinases (MMPs)

Matrix Metalloproteinases (MMPs) are zinc-dependent enzymes that regulate extracellular matrix remodeling, with critical roles in health, disease, and interactions with the microbiome.

Irritable Bowel Syndrome (IBS)

Irritable Bowel Syndrome (IBS) is a common gastrointestinal disorder characterized by symptoms such as abdominal pain, bloating, and altered bowel habits. Recent research has focused on the gut microbiota's role in IBS, aiming to identify specific microbial signatures associated with the condition.

Matrix Metalloproteinases (MMPs)

Matrix Metalloproteinases (MMPs) are zinc-dependent enzymes that regulate extracellular matrix remodeling, with critical roles in health, disease, and interactions with the microbiome.

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