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1H NMR- based metabolomics approaches as non-invasive tools for diagnosis of endometriosis A Comparative Study of Blood Levels of Manganese, Some Macroelements and Heavy Metals in Obese and Non-Obese Polycystic Ovary Syndrome Patients A Comparative Study of the Gut Microbiota Associated With Immunoglobulin a Nephropathy and Membranous Nephropathy A comparative study of the gut microbiota in immune-mediated inflammatory diseases-does a common dysbiosis exist? A comprehensive analysis of breast cancer microbiota and host gene expression A comprehensive analysis of breast cancer microbiota and host gene expression A cross-sectional analysis about bacterial vaginosis, high-risk human papillomavirus infection, and cervical intraepithelial neoplasia in Chinese women A cross-sectional pilot study of birth mode and vaginal microbiota in reproductive-age women A metabonomics approach as a means for identification of potentialbiomarkers for early diagnosis of endometriosis A More Diverse Cervical Microbiome Associates with Better Clinical Outcomes in Patients with Endometriosis: A Pilot Study A Multi-Omic Systems-Based Approach Reveals Metabolic Markers of Bacterial Vaginosis and Insight into the Disease A New Approach to Polycystic Ovary Syndrome: The Gut Microbiota A Review of the Anti-inflammatory Properties of Clindamycin in the Treatment of Acne Vulgaris A Systematic Review and Meta-Analysis of Premenstrual Syndrome with Special Emphasis on Herbal Medicine and Nutritional Supplements. Adherence to the Mediterranean Diet, Dietary Patterns and Body Composition in Women with Polycystic Ovary Syndrome (PCOS)

Validation of Metronidazole as a microbiome-targeted intervention for Endometriosis

Researched by:

  • Karen Pendergrass ID
    Karen Pendergrass

    User avatarKaren Pendergrass is a microbiome researcher specializing in microbiome-targeted interventions (MBTIs). She systematically analyzes scientific literature to identify microbial patterns, develop hypotheses, and validate interventions. As the founder of the Microbiome Signatures Database, she bridges microbiome research with clinical practice. In 2012, based on her own investigative research, she became the first documented case of FMT for Celiac Disease—four years before the first published case study.

April 24, 2025

Metronidazole is a validated microbiome-targeted intervention (BTI) for endometriosis, reducing key dysbiotic taxa and suppressing inflammation and lesion progression.

Researched by:

  • Karen Pendergrass ID
    Karen Pendergrass

    User avatarKaren Pendergrass is a microbiome researcher specializing in microbiome-targeted interventions (MBTIs). She systematically analyzes scientific literature to identify microbial patterns, develop hypotheses, and validate interventions. As the founder of the Microbiome Signatures Database, she bridges microbiome research with clinical practice. In 2012, based on her own investigative research, she became the first documented case of FMT for Celiac Disease—four years before the first published case study.

Last Updated: December 9, 2024

Microbiome Signatures identifies and validates condition-specific microbiome shifts and interventions to accelerate clinical translation. Our multidisciplinary team supports clinicians, researchers, and innovators in turning microbiome science into actionable medicine.

Karen Pendergrass

Karen Pendergrass is a microbiome researcher specializing in microbiome-targeted interventions (MBTIs). She systematically analyzes scientific literature to identify microbial patterns, develop hypotheses, and validate interventions. As the founder of the Microbiome Signatures Database, she bridges microbiome research with clinical practice. In 2012, based on her own investigative research, she became the first documented case of FMT for Celiac Disease—four years before the first published case study.

Overview

Metronidazole demonstrates significant potential as a microbiome-targeted intervention (MBTI) for endometriosis by reducing key pathogenic taxa, modulating inflammation, and supporting microbial balance. Studies reveal that metronidazole reduces ectopic lesion size and inflammation in mice, while restoring lesion growth through fecal gavage highlights the microbiome’s role in lesion progression. [1] By targeting microbial MMAs such as Bacteroides, Fusobacterium nucleatum, Bacteroides fragilis, and Escherichia coli, metronidazole aligns with the pathological and microbial hallmarks of endometriosis.

Microbial Modulation

Metronidazole is particularly effective against Bacteroides and Fusobacterium nucleatum, two microbial taxa consistently elevated in endometriosis. [2] Importantly, it also reduces the growth rate of Escherichia coli when in the presence of Bacteroides fragilis, demonstrating its selective activity in complex microbial ecosystems. [3] Notably, metronidazole has also been shown to increase lactobacilli populations at specific concentrations (128–256 mg/ml), contributing to the restoration of beneficial microbiota and reducing dysbiosis-associated inflammation​. [4] These microbial shifts align with the known endometriosis microbiome signature and highlight metronidazole’s dual ability to suppress dysbiotic taxa and support beneficial microbes.

Key Features of the Microbiome SignatureObserved Effects of Metronidazole
Increased Bacteroides and Fusobacterium nucleatumSuppresses these key dysbiotic taxa.
Increased Bacteroides fragilis and Escherichia coliReduces their abundance, especially in co-culture.
Decreased LactobacilliPromotes lactobacilli growth at optimal concentrations.

Validation of the Microbiome Signature


The endometriosis microbiome signature features elevated levels of Bacteroides and Fusobacterium nucleatum, which contribute to lesion progression and inflammation. Metronidazole’s ability to specifically reduce these taxa, coupled with its capacity to increase lactobacilli under appropriate conditions, reinforces the clinical relevance of this microbiome signature. The correlation between metronidazole’s microbial effects and reduced lesion size further validates the signature as a reflection of endometriosis pathogenesis.

Dual Validation of MBTI and Microbiome Signature

Metronidazole exemplifies the interconnectedness of microbial dysbiosis and systemic pathology in endometriosis. By reducing key MMAs while promoting lactobacilli growth, metronidazole serves as both an effective MBTI and a tool for validating the microbiome signature of the condition. The observed clinical outcomes, including reduced lesion growth and inflammation, confirm the utility of metronidazole in addressing the microbial and pathological drivers of endometriosis.

Conclusion

Metronidazole offers a multifaceted approach to endometriosis by targeting microbial imbalances and modulating inflammation. Its ability to reduce key dysbiotic taxa, increase lactobacilli at specific doses, and suppress lesion progression validates its role as an MBTI and strengthens the clinical relevance of the endometriosis microbiome signature. These findings position metronidazole as a promising therapeutic option in the management of endometriosis.

Microbiome-Targeted Interventions (MBTIs)

Microbiome Targeted Interventions (MBTIs) are cutting-edge treatments that utilize information from Microbiome Signatures to modulate the microbiome, revolutionizing medicine with unparalleled precision and impact.

Endometriosis

Endometriosis involves ectopic endometrial tissue causing pain and infertility. Validated and Promising Interventions include Hyperbaric Oxygen Therapy (HBOT), Low Nickel Diet, and Metronidazole therapy.

Major Microbial Associations (MMAs)

Major Microbial Associations (MMAs) are fundamental in understanding disease-microbiome interactions and play a crucial role in advancing microbiome-targeted interventions aimed at treating or preventing diseases through microbial modulation.

Escherichia coli (E. coli)

Escherichia coli (E. coli) is a versatile bacterium, from gut commensal to pathogen, linked to chronic conditions like endometriosis.

References

  1. Antibiotic therapy with metronidazole reduces endometriosis disease progression in mice: a potential role for gut microbiota. . Chadchan SB, Cheng M, Parnell LA, et al.. (Hum Reprod. 2019)
  2. Analysis of Fusobacterium persistence and antibiotic response in colorectal cancer.. Bullman S, Pedamallu CS, Sicinska E, Clancy TE, Zhang X, Cai D, Neuberg D, Huang K, Guevara F, Nelson T, Chipashvili O, Hagan T, Walker M, Ramachandran A, Diosdado B, Serna G, Mulet N, Landolfi S, Ramon Y Cajal S, Fasani R, Aguirre AJ, Ng K, Élez E, Ogino S, Tabernero J, Fuchs CS, Hahn WC, Nuciforo P, Meyerson M.. (Science. 2017)
  3. Activity of metronidazole against Escherichia coli in experimental intra-abdominal sepsis.. Onderdonk AB, Louie TJ, Tally FP, Bartlett JG.. (J Antimicrob Chemother. 1979)
  4. Effect of metronidazole on the growth of vaginal lactobacilli in vitro.. Simoes JA, Aroutcheva AA, Shott S, Faro S.. (Infect Dis Obstet Gynecol. 2001)

Bullman S, Pedamallu CS, Sicinska E, Clancy TE, Zhang X, Cai D, Neuberg D, Huang K, Guevara F, Nelson T, Chipashvili O, Hagan T, Walker M, Ramachandran A, Diosdado B, Serna G, Mulet N, Landolfi S, Ramon Y Cajal S, Fasani R, Aguirre AJ, Ng K, Élez E, Ogino S, Tabernero J, Fuchs CS, Hahn WC, Nuciforo P, Meyerson M.

Analysis of Fusobacterium persistence and antibiotic response in colorectal cancer.

Science. 2017

Onderdonk AB, Louie TJ, Tally FP, Bartlett JG.

Activity of metronidazole against Escherichia coli in experimental intra-abdominal sepsis.

J Antimicrob Chemother. 1979

Simoes JA, Aroutcheva AA, Shott S, Faro S.

Effect of metronidazole on the growth of vaginal lactobacilli in vitro.

Infect Dis Obstet Gynecol. 2001

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