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Increase in fecal primary bile acids and dysbiosis in patients with diarrhea-predominant irritable bowel syndrome Original paper

May 18, 2025

  • Irritable Bowel Syndrome (IBS)
    Irritable Bowel Syndrome (IBS)

    Irritable Bowel Syndrome (IBS) is a common gastrointestinal disorder characterized by symptoms such as abdominal pain, bloating, and altered bowel habits. Recent research has focused on the gut microbiota's role in IBS, aiming to identify specific microbial signatures associated with the condition.

Last Updated: 2012

Microbiome Signatures identifies and validates condition-specific microbiome shifts and interventions to accelerate clinical translation. Our multidisciplinary team supports clinicians, researchers, and innovators in turning microbiome science into actionable medicine.

Karen Pendergrass

Karen Pendergrass is a microbiome researcher specializing in microbiome-targeted interventions (MBTIs). She systematically analyzes scientific literature to identify microbial patterns, develop hypotheses, and validate interventions. As the founder of the Microbiome Signatures Database, she bridges microbiome research with clinical practice. In 2012, based on her own investigative research, she became the first documented case of FMT for Celiac Disease—four years before the first published case study.

Location
France
Sample Site
Feces
Species
Homo sapiens

What was studied?

This study examined the alterations in fecal bile acid (BA) composition and gut microbiota dysbiosis in patients with diarrhea-predominant irritable bowel syndrome (IBS-D) compared to healthy subjects. The research aimed to identify how shifts in primary and secondary bile acid levels correlate with symptoms of diarrhea, stool frequency, and microbial changes that could influence bile acid metabolism

Who was studied?

The study included 14 patients diagnosed with diarrhea-predominant IBS (IBS-D) and 18 healthy subjects (HS) as controls. All participants were evaluated for clinical symptoms, and stool samples were collected for analysis of bile acid composition and gut microbiota profiling using quantitative PCR (qPCR) and high-performance liquid chromatography–tandem mass spectrometry (HPLC-MS/MS).

What were the most important findings?

The study uncovered a significant increase in primary bile acids (BA) in the feces of IBS-D patients compared to healthy subjects, with a corresponding decrease in secondary bile acids. Primary bile acids, particularly cholic acid (CA) and chenodeoxycholic acid (CDCA), were markedly elevated, contributing to looser stool consistency and higher stool frequency. These elevations in primary BA were positively correlated with the Bristol Stool Scale score and the frequency of bowel movements. In contrast, secondary bile acids such as deoxycholic acid (DCA) were significantly reduced in IBS-D patients, suggesting impaired microbial transformation. Dysbiosis within the gut microbiota was also evident, characterized by a significant increase in Escherichia coli and a marked decrease in Bifidobacterium and members of the Leptum group. These microbial shifts indicate a reduction in the bacteria responsible for bile acid dehydroxylation, further exacerbating the accumulation of primary BA. The study postulates that this microbial imbalance not only alters bile acid metabolism but may also promote mucosal permeability and colonic motility, contributing to the pathophysiology of diarrhea in IBS-D patients.

ParameterIBS-D Patients
Primary Bile AcidsSignificantly elevated (CA, CDCA)
Secondary Bile AcidsMarkedly reduced (DCA)
Gut Microbiota ImbalanceIncrease in Escherichia coli
Microbial ReductionsBifidobacterium and Leptum groups
Stool FrequencyIncreased; correlated with primary BA levels
Stool ConsistencyLooser; linked to higher primary BA levels
Microbial TransformationImpaired conversion from primary to secondary BA
Inflammatory ImplicationsSuggestive of increased mucosal permeability and motility changes

What are the greatest implications of this study?

This study underscores the critical role of bile acid dysbiosis in the pathogenesis of diarrhea-predominant IBS. The findings suggest that the elevated primary bile acids, linked to microbial dysbiosis, could serve as both biomarkers and therapeutic targets for IBS-D. The observed reduction in secondary bile acids, typically resulting from microbial transformation, highlights the importance of gut microbiota in maintaining bile acid homeostasis. This disruption in bile acid metabolism not only influences stool consistency and motility but may also contribute to chronic gut inflammation. Therapeutic interventions that aim to modulate bile acid levels or restore microbial balance may hold promise for symptom relief in IBS-D patients.

Irritable Bowel Syndrome (IBS)

Irritable Bowel Syndrome (IBS) is a common gastrointestinal disorder characterized by symptoms such as abdominal pain, bloating, and altered bowel habits. Recent research has focused on the gut microbiota's role in IBS, aiming to identify specific microbial signatures associated with the condition.

  • Associated Conditions
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