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1H NMR- based metabolomics approaches as non-invasive tools for diagnosis of endometriosis A Comparative Study of Blood Levels of Manganese, Some Macroelements and Heavy Metals in Obese and Non-Obese Polycystic Ovary Syndrome Patients A Comparative Study of the Gut Microbiota Associated With Immunoglobulin a Nephropathy and Membranous Nephropathy A comparative study of the gut microbiota in immune-mediated inflammatory diseases-does a common dysbiosis exist? A comprehensive analysis of breast cancer microbiota and host gene expression A comprehensive analysis of breast cancer microbiota and host gene expression A cross-sectional analysis about bacterial vaginosis, high-risk human papillomavirus infection, and cervical intraepithelial neoplasia in Chinese women A cross-sectional pilot study of birth mode and vaginal microbiota in reproductive-age women A metabonomics approach as a means for identification of potentialbiomarkers for early diagnosis of endometriosis A More Diverse Cervical Microbiome Associates with Better Clinical Outcomes in Patients with Endometriosis: A Pilot Study A Multi-Omic Systems-Based Approach Reveals Metabolic Markers of Bacterial Vaginosis and Insight into the Disease A New Approach to Polycystic Ovary Syndrome: The Gut Microbiota A Review of the Anti-inflammatory Properties of Clindamycin in the Treatment of Acne Vulgaris A Systematic Review and Meta-Analysis of Premenstrual Syndrome with Special Emphasis on Herbal Medicine and Nutritional Supplements. Adherence to the Mediterranean Diet, Dietary Patterns and Body Composition in Women with Polycystic Ovary Syndrome (PCOS)

Microbiome Profile of Deep Endometriosis Patients: Comparison of Vaginal Fluid, Endometrium and Lesion Original paper

Researched by:

  • Kimberly Eyer ID
    Kimberly Eyer

    User avatarKimberly Eyer, a Registered Nurse with 30 years of nursing experience across diverse settings, including Home Health, ICU, Operating Room Nursing, and Research. Her roles have encompassed Operating Room Nurse, RN First Assistant, and Acting Director of a Same Day Surgery Center. Her specialty areas include Adult Cardiac Surgery, Congenital Cardiac Surgery, Vascular Surgery, and Neurosurgery.

May 19, 2025

  • Women’s Health
    Women’s Health

    Women’s health, a vital aspect of medical science, encompasses various conditions unique to women’s physiological makeup. Historically, women were often excluded from clinical research, leading to a gap in understanding the intricacies of women’s health needs. However, recent advancements have highlighted the significant role that the microbiome plays in these conditions, offering new insights and potential therapies. MicrobiomeSignatures.com is at the forefront of exploring the microbiome signature of each of these conditions to unravel the etiology of these diseases and develop targeted microbiome therapies.

  • Endometriosis
    Endometriosis

    Endometriosis involves ectopic endometrial tissue causing pain and infertility. Validated and Promising Interventions include Hyperbaric Oxygen Therapy (HBOT), Low Nickel Diet, and Metronidazole therapy.

Researched by:

  • Kimberly Eyer ID
    Kimberly Eyer

    User avatarKimberly Eyer, a Registered Nurse with 30 years of nursing experience across diverse settings, including Home Health, ICU, Operating Room Nursing, and Research. Her roles have encompassed Operating Room Nurse, RN First Assistant, and Acting Director of a Same Day Surgery Center. Her specialty areas include Adult Cardiac Surgery, Congenital Cardiac Surgery, Vascular Surgery, and Neurosurgery.

Last Updated: 2020

Microbiome Signatures identifies and validates condition-specific microbiome shifts and interventions to accelerate clinical translation. Our multidisciplinary team supports clinicians, researchers, and innovators in turning microbiome science into actionable medicine.

Karen Pendergrass

Karen Pendergrass is a microbiome researcher specializing in microbiome-targeted interventions (MBTIs). She systematically analyzes scientific literature to identify microbial patterns, develop hypotheses, and validate interventions. As the founder of the Microbiome Signatures Database, she bridges microbiome research with clinical practice. In 2012, based on her own investigative research, she became the first documented case of FMT for Celiac Disease—four years before the first published case study.

What was studied?

This study explored the microbiome profile in deep endometriosis by comparing the bacterial composition of vaginal fluid, eutopic endometrium, and deep endometriotic lesions. The primary goal was to identify whether distinct microbial patterns exist in these tissue sites of women with deep endometriosis compared to those without the condition. To achieve this, researchers employed high-throughput 16S rRNA sequencing to analyze microbial DNA extracted from tissue samples collected during laparoscopic surgery. The analysis included alpha and beta diversity assessments to determine variations in microbial richness and community structure across different tissue types.

Who was studied?

The study involved 21 participants, including 10 women with histologically confirmed deep endometriosis and 11 healthy controls undergoing laparoscopic surgery for benign gynecological conditions or elective tubal ligation. Samples were obtained from three anatomical sites: vaginal fluid, eutopic endometrium, and deep endometriotic lesions. Participants were carefully screened to exclude those with recent antibiotic, antifungal, or probiotic use, as well as those with autoimmune or inflammatory diseases that could affect microbiome composition.

What were the most important findings?

Microbiome analysis revealed significant differences in bacterial profiles between deep endometriotic lesions, eutopic endometrium, and vaginal fluid. In vaginal fluid and endometrial samples, the microbiome was predominantly composed of Lactobacillus, Gardnerella, Streptococcus, and Prevotella. In contrast, deep endometriotic lesions exhibited a distinct microbial landscape with reduced Lactobacillus and higher relative abundances of Alishewanella, Enterococcus, and Pseudomonas. Notably, Alishewanella and Pseudomonas were almost exclusively found in lesion samples, suggesting these genera may be associated with the inflammatory microenvironment characteristic of deep endometriosis.

Further analysis indicated that deep endometriotic lesions had greater microbial diversity than both vaginal fluid and eutopic endometrium. Beta diversity analysis showed a statistically significant difference in microbial community structure between lesion samples and the other tissue sites (p = 0.036), suggesting that endometriotic tissue supports a unique microbiome that could influence local immune responses and inflammation. These findings point towards a potential role for certain bacteria in the pathogenesis of deep endometriosis, either by promoting inflammation or altering tissue homeostasis.

Microbial GroupDeep Endometriosis FindingsClinical Implications
LactobacillusDecreased in lesion samplesReduction may contribute to loss of protective barrier
AlishewanellaIncreased in lesionsPotential involvement in local inflammation
PseudomonasIncreased in lesionsLinked to immune modulation and tissue inflammation
EnterococcusElevated in lesion samplesKnown for its association with chronic inflammation
Alpha DiversityIncreased in lesions compared to other sitesSuggests a unique microbial community fostering inflammation
Beta DiversitySignificantly different from endometrium and vaginal fluid (p = 0.036)Indicates unique microbial signature in lesions

What are the greatest implications of this study?

The results of this study underscore the presence of a unique microbiome profile in deep endometriotic lesions, characterized by increased microbial diversity and the presence of potentially pathogenic bacteria like Pseudomonas and Alishewanella. These findings suggest that microbiome alterations may contribute to the inflammatory environment observed in endometriosis, potentially influencing disease progression and symptom severity. This study opens avenues for further investigation into microbiome-targeted therapies aimed at modulating bacterial communities in endometriotic tissue to alleviate inflammation and inhibit lesion growth. Additionally, the distinct microbial signatures identified in deep endometriosis lesions may serve as non-invasive biomarkers for early detection and improved clinical management of the disease.

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