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Clindamycin is effective in treating bacterial vaginosis by reducing Gardnerella vaginalis and promoting Lactobacillus growth, but recurrence rates highlight the need for adjunct therapies targeting biofilms.

Validation of Clindamycin as a microbiome-targeted intervention for Bacterial Vaginosis

Researched by:

  • Divine Aleru ID
    Divine Aleru

    User avatarI am a biochemist with a deep curiosity for the human microbiome and how it shapes human health, and I enjoy making microbiome science more accessible through research and writing. With 2 years experience in microbiome research, I have curated microbiome studies, analyzed microbial signatures, and now focus on interventions as a Microbiome Signatures and Interventions Research Coordinator.

May 15, 2025

Clindamycin is effective in treating bacterial vaginosis by reducing Gardnerella vaginalis and promoting Lactobacillus growth, but recurrence rates highlight the need for adjunct therapies targeting biofilms.

research-feed Research feed

Researched by:

  • Divine Aleru ID
    Divine Aleru

    User avatarI am a biochemist with a deep curiosity for the human microbiome and how it shapes human health, and I enjoy making microbiome science more accessible through research and writing. With 2 years experience in microbiome research, I have curated microbiome studies, analyzed microbial signatures, and now focus on interventions as a Microbiome Signatures and Interventions Research Coordinator.

Last Updated: April 5, 2025

Microbiome Signatures identifies and validates condition-specific microbiome shifts and interventions to accelerate clinical translation. Our multidisciplinary team supports clinicians, researchers, and innovators in turning microbiome science into actionable medicine.

Divine Aleru

I am a biochemist with a deep curiosity for the human microbiome and how it shapes human health, and I enjoy making microbiome science more accessible through research and writing. With 2 years experience in microbiome research, I have curated microbiome studies, analyzed microbial signatures, and now focus on interventions as a Microbiome Signatures and Interventions Research Coordinator.

Overview

Clindamycin is a well-established antibiotic used to treat bacterial vaginosis (BV), a condition caused by an imbalance in the vaginal microbiota, particularly the overgrowth of anaerobic bacteria like Gardnerella vaginalis.[1] Clindamycin works by inhibiting protein synthesis in susceptible bacteria, targeting anaerobes and thus reducing G. vaginalis and other pathogenic species. This intervention targets the microbiome by explicitly acting on pathogenic bacteria while promoting a healthier microbial environment, particularly by supporting Lactobacillus species. However, biofilms and pathobionts persist, limiting clindamycin’s effects and contributing to BV recurrence. The clinical variability in treatment outcomes reinforces the need for adjunct therapies that target biofilm disruption and enhance the effectiveness of clindamycin in recurrent BV cases.[2]

Validation of Clindamycin as an MBTI

Clindamycin’s mechanism of action involves inhibiting bacterial protein synthesis by binding to the 50S subunit of the ribosome. This prevents bacterial cell growth and leads to the death of susceptible anaerobic bacteria. Studies have shown that clindamycin is particularly effective against Gardnerella vaginalis and other BV-associated anaerobic pathogens. It has demonstrated success in reducing G. vaginalis load and restoring Lactobacillus dominance, which is crucial for maintaining a healthy vaginal microbiota. Despite these effects, clindamycin’s efficacy varies, and many patients experience recurrence, often linked to biofilm formation and the persistence of pathobionts.[3] This indicates the need for treatments that target these biofilms or pathobionts to improve long-term outcomes. Clinical studies also suggest that clindamycin’s ability to promote Lactobacillus species could reinforce its role as a microbiome-targeted intervention (MBTI) for BV, but adjunct therapies may be necessary to address the recurrence associated with biofilms​.

Microbial Effects Summary Table

Microbial Effects of ClindamycinBV Microbiome Signature
Increased Lactobacillus speciesLactobacilli are diminished in BV
Reduced Gardnerella vaginalis and other anaerobesG. vaginalis and other anaerobes are predominant in BV
Reduction in microbial diversityIncreased microbial diversity in BV, including pathogenic species

Validation of the Microbiome Signature of BV

An overgrowth of anaerobic bacteria particularly Gardnerella vaginalis, and a reduction in Lactobacillus species, which maintain the vaginal ecosystem’s acidity, causes bacterial vaginosis. The microbiome signature of BV reflects the dominance of these anaerobes and reduced Lactobacillus populations.[4] Clindamycin’s effects on this microbial imbalance, by reducing G. vaginalis and promoting Lactobacillus growth, align with the correction of the BV microbiome signature. However, the persistence of pathogenic bacteria and biofilm formation remains a challenge, emphasizing the need for more targeted treatments to address these persistent factors.[5] While clindamycin restores some elements of a healthier microbiome, it does not fully resolve the microbial dysbiosis associated with BV in some patients.

Dual Validation Paragraph

The observed microbial shifts following clindamycin treatment, particularly the reduction in Gardnerella vaginalis and other anaerobic bacteria and the increase in Lactobacillus species, validate both clindamycin as a microbiome-targeted therapy and the microbiome signature of BV as clinically accurate.[6] Clindamycin reduces pathogenic anaerobes and promotes beneficial Lactobacillus, consistent with the microbial shifts expected in BV treatment. However, the recurrence of BV in many cases, especially in the presence of biofilm formation, indicates the need for adjunct therapies to target these biofilms and provide more long-term success. This reinforces the importance of considering the microbiome signature of BV when developing treatment strategies and improving patient outcomes​.

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Single-Dose, Bioadhesive Clindamycin 2% Gel for Bacterial Vaginosis: A Randomized Controlled Trial
May 2, 2022
/
Bacterial Vaginosis
Bacterial Vaginosis

Did you know?
Bacterial vaginosis (BV) increases the risk of acquiring HIV by up to 60% in women due to the disruption of the protective vaginal microbiome and the resulting inflammation that facilitates the virus’s entry.

This study evaluates the efficacy and safety of a single-dose 2% clindamycin vaginal gel for treating bacterial vaginosis, demonstrating significant clinical and bacteriologic cure rates compared to a placebo.

What was studied?

This study focused on assessing the efficacy and safety of a single-dose, bioadhesive 2% clindamycin vaginal gel in treating bacterial vaginosis (BV). The study was randomized, controlled, and double-blind, comparing clindamycin with a placebo gel.

Who was studied?

The study included women who had a clinical diagnosis of bacterial vaginosis, defined by meeting all four Amsel’s criteria, and with Nugent scores of 7-10. The researchers randomized the participants into two groups: the clindamycin gel group and the placebo group. The study enrolled a racially diverse population, including a high percentage of Black women, and most participants had a history of recurrent BV.

What were the most important findings?

The study demonstrated that the 2% clindamycin vaginal gel was significantly more effective than the placebo in achieving clinical cure, defined as the resolution of three of the four Amsel’s criteria, at the test-of-cure visit (day 21-30). The clinical cure rate was 70.5% for the clindamycin group, compared to 35.6% for the placebo group, with a difference of 34.9%. Additionally, clindamycin showed statistically significant improvements in bacteriologic and therapeutic cure rates. The gel was also well-tolerated, with vulvovaginal candidiasis being the most common adverse event, a known side effect of clindamycin use.

The study highlights the importance of the bioadhesive property of clindamycin gel, which allows for sustained drug release, thus increasing retention and enhancing the treatment’s efficacy. This mechanism is particularly relevant for improving patient compliance and the therapeutic outcomes in BV treatment. The study design adhered to FDA guidance, specifically including only participants with high Nugent scores (7-10), which strengthens the validity of the findings.

What are the implications of this study?

The study’s findings offer a promising new option for treating BV with a single-dose vaginal gel that enhances patient compliance through reduced leakage and prolonged retention time. The significant clinical cure rates observed in patients with recurrent BV are especially important, as recurrent BV is a common and challenging condition to manage. The study demonstrates that clindamycin’s bioadhesive formulation may be more effective than traditional treatment options that require multiple applications. This gel could become an essential treatment in managing BV, especially in women who experience frequent recurrences.

The study supports the need for further research into improving BV treatment strategies. It also reinforces the importance of managing BV to prevent complications such as infertility, pelvic inflammatory disease, and increased susceptibility to sexually transmitted infections, including HIV.

Treatment of Bacterial Vaginosis with Topical Clindamycin or Metronidazole
September 1, 2005
/
Bacterial Vaginosis
Bacterial Vaginosis

Did you know?
Bacterial vaginosis (BV) increases the risk of acquiring HIV by up to 60% in women due to the disruption of the protective vaginal microbiome and the resulting inflammation that facilitates the virus’s entry.

This study compares the microbiological effects of metronidazole and clindamycin in treating bacterial vaginosis, highlighting differences in antimicrobial resistance and efficacy in eliminating BV-associated pathogens.

What was studied?

The study investigated the microbiologic response to treatment for bacterial vaginosis (BV) with topical clindamycin and metronidazole. It focused on the microbiological changes observed in vaginal flora before and after treatment, assessing the impact of these treatments on bacterial populations, including Gardnerella vaginalis, Mycoplasma hominis, and anaerobic gram-negative rods.

Who was studied?

The study included 119 nonpregnant, premenopausal women aged 18 to 45 diagnosed with BV using clinical and Gram stain criteria. They were randomized to receive either clindamycin vaginal ovules or metronidazole vaginal gel. The study also evaluated the microbiologic response over a 3-month follow-up period.

What were the most important findings?

The study revealed that both metronidazole and clindamycin treatments resulted in significant changes in the vaginal microflora. Both treatments led to decreased colonization by Gardnerella vaginalis and Mycoplasma hominis, common BV-associated pathogens. However, metronidazole was more effective in reducing the colonization of Prevotella bivia and black-pigmented Prevotella species. Clindamycin treatment resulted in the emergence of resistant subpopulations of P. bivia and black-pigmented Prevotella species, with resistance to clindamycin increasing significantly 7 to 12 days after treatment. In contrast, metronidazole showed no such increase in resistance. The study found that while both treatments resulted in similar clinical cure rates, the microbiological response differed between the two, with metronidazole proving to be more effective in eradicating anaerobic gram-negative rods. The study further emphasized that the increased clindamycin resistance following treatment with clindamycin could complicate the management of BV, especially with recurrent cases.

What are the implications of this study?

The study highlights the differences in the microbiologic response to clindamycin and metronidazole, suggesting that while both are effective in treating BV, metronidazole may offer a more favorable outcome, particularly in terms of preventing the emergence of antibiotic resistance. The increased clindamycin resistance observed with repeated use suggests that clindamycin may not be the ideal choice for recurrent BV cases. This finding has implications for clinicians in choosing the most appropriate treatment for BV, especially for patients with recurrent infections. The study underscores the importance of antimicrobial stewardship and the potential for developing resistance with the overuse of antibiotics like clindamycin.

Fighting polymicrobial biofilms in bacterial vaginosis
April 12, 2023
/
Bacterial Vaginosis
Bacterial Vaginosis

Did you know?
Bacterial vaginosis (BV) increases the risk of acquiring HIV by up to 60% in women due to the disruption of the protective vaginal microbiome and the resulting inflammation that facilitates the virus’s entry.

This review examines how polymicrobial biofilms contribute to bacterial vaginosis (BV) treatment failure and explores alternative strategies for improved therapy.

What was studied?

The study focused on the role of polymicrobial biofilms in bacterial vaginosis (BV) and their impact on treatment outcomes. The review highlights the complexity of BV, which is often driven by polymicrobial biofilms consisting of a variety of microorganisms, including Gardnerella vaginalis, Fannyhessea vaginae, Prevotella bivia, and other anaerobic bacteria. The study also explores how these biofilms contribute to BV's persistence and resistance to treatment.

Who was studied?

The review covers various studies that investigated the microbial composition of BV and its associated biofilms, focusing on the microbial species that are involved in these biofilm structures. It includes research on the role of Gardnerella vaginalis and other BV-associated pathogens in forming biofilms that contribute to the persistence of BV in the vaginal environment.

What were the most important findings?

The review underscores that the formation of polymicrobial biofilms is central to BV's persistence and recurrence. These biofilms provide a protective matrix that shields bacteria from the effects of antimicrobial agents like metronidazole and clindamycin. The study highlights that Gardnerella vaginalis and Fannyhessea vaginae are the dominant species within these biofilms, facilitating the growth of other BV-associated bacteria like Prevotella bivia. This synergistic interaction among bacteria enhances their resistance to treatment and increases the likelihood of BV recurrence.

The study also points out that biofilms are more difficult to treat than planktonic bacteria due to their reduced susceptibility to antibiotics, making treatment regimens less effective. Antibiotics can reduce the bacterial load, but biofilms often persist, leading to relapse.

This review also explores promising alternative strategies, such as probiotics, prebiotics, and phage endolysins. These approaches aim to restore the natural vaginal microbiota by promoting the growth of beneficial Lactobacillus species and reducing the pathogenic bacteria that drive BV.

What are the implications of this study?

The study highlights the critical role of polymicrobial biofilms in BV persistence and recurrence. It suggests that addressing the biofilm structure should be a key focus in developing more effective BV treatments. Traditional antibiotic therapies are insufficient in eliminating BV due to biofilm formation, which provides a physical barrier to treatment and contributes to the high rates of recurrence. The review points to the potential for alternative treatments, like probiotics and phage therapy, to improve patient outcomes by targeting these biofilms and restoring a balanced vaginal microbiome. However, the study stresses the need for further research to validate these therapies and establish their long-term effectiveness.

By understanding the polymicrobial nature of BV and its role in antimicrobial resistance, clinicians can better navigate the challenges of recurrent infections. Exploring non-antibiotic treatments and biofilm-targeting therapies offers a promising direction for more sustainable BV management, providing hope for patients who suffer from recurrent episodes that are resistant to conventional therapies.

Bacterial Vaginosis

Bacterial vaginosis (BV) is caused by an imbalance in the vaginal microbiota, where the typically dominant Lactobacillus species are significantly reduced, leading to an overgrowth of anaerobic and facultative bacteria.

Microbiome-Targeted Interventions (MBTIs)

Microbiome Targeted Interventions (MBTIs) are cutting-edge treatments that utilize information from Microbiome Signatures to modulate the microbiome, revolutionizing medicine with unparalleled precision and impact.

References

  1. Microbiologic Response to Treatment of Bacterial Vaginosis with Topical Clindamycin or Metronidazole. Austin MN, Beigi RH, Meyn LA, Hillier SL. (Metronidazole. J Clin Microbiol 43: 1 September 2005)
  2. Fighting polymicrobial biofilms in bacterial vaginosis. Sousa, L.G.V., Pereira, S.A. & Cerca, N.. (Microbial Biotechnology. 2023;16:1423–1437.)
  3. Fighting polymicrobial biofilms in bacterial vaginosis. Sousa, L.G.V., Pereira, S.A. & Cerca, N.. (Microbial Biotechnology. 2023;16:1423–1437.)
  4. Single-Dose, Bioadhesive Clindamycin 2% Gel for Bacterial Vaginosis. Mauck, Christine MD, MPH; Hillier, Sharon L. PhD; Gendreau, Judy MD; Dart, Clint MS; Chavoustie, Steven MD; Sorkin-Wells, Valerie MD; Nicholson-Uhl, Clifton MD; Perez, Brandon MD; Jacobs, Mark MD; Zack, Nadene MS; Friend, David PhD.. (Obstetrics & Gynecology 139(6):p 1092-1102, June 2022.)
  5. Fighting polymicrobial biofilms in bacterial vaginosis. Sousa, L.G.V., Pereira, S.A. & Cerca, N.. (Microbial Biotechnology. 2023;16:1423–1437.)
  6. Microbiologic Response to Treatment of Bacterial Vaginosis with Topical Clindamycin or Metronidazole. Austin MN, Beigi RH, Meyn LA, Hillier SL. (Metronidazole. J Clin Microbiol 43: 1 September 2005)

Austin MN, Beigi RH, Meyn LA, Hillier SL

Microbiologic Response to Treatment of Bacterial Vaginosis with Topical Clindamycin or Metronidazole

Metronidazole. J Clin Microbiol 43: 1 September 2005

Read Review

Sousa, L.G.V., Pereira, S.A. & Cerca, N.

Fighting polymicrobial biofilms in bacterial vaginosis

Microbial Biotechnology. 2023;16:1423–1437.

Read Review

Sousa, L.G.V., Pereira, S.A. & Cerca, N.

Fighting polymicrobial biofilms in bacterial vaginosis

Microbial Biotechnology. 2023;16:1423–1437.

Read Review

Mauck, Christine MD, MPH; Hillier, Sharon L. PhD; Gendreau, Judy MD; Dart, Clint MS; Chavoustie, Steven MD; Sorkin-Wells, Valerie MD; Nicholson-Uhl, Clifton MD; Perez, Brandon MD; Jacobs, Mark MD; Zack, Nadene MS; Friend, David PhD.

Single-Dose, Bioadhesive Clindamycin 2% Gel for Bacterial Vaginosis

Obstetrics & Gynecology 139(6):p 1092-1102, June 2022.

Read Review

Sousa, L.G.V., Pereira, S.A. & Cerca, N.

Fighting polymicrobial biofilms in bacterial vaginosis

Microbial Biotechnology. 2023;16:1423–1437.

Read Review

Austin MN, Beigi RH, Meyn LA, Hillier SL

Microbiologic Response to Treatment of Bacterial Vaginosis with Topical Clindamycin or Metronidazole

Metronidazole. J Clin Microbiol 43: 1 September 2005

Read Review
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